Miyakogusa Predicted Gene

Lj3g3v2576300.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2576300.1 Non Characterized Hit- tr|I1KHE7|I1KHE7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.24087
PE,88.82,0,seg,NULL; Nup84_Nup100,Nuclear pore protein 84/107;
SUBFAMILY NOT NAMED,NULL; NUP107-RELATED,Nuclear,CUFF.44241.1
         (1113 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g022010.1 | nuclear pore protein | HC | chr8:7724079-77427...  1860   0.0  

>Medtr8g022010.1 | nuclear pore protein | HC | chr8:7724079-7742774 |
            20130731
          Length = 1081

 Score = 1860 bits (4819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 899/1112 (80%), Positives = 978/1112 (87%), Gaps = 37/1112 (3%)

Query: 5    EMAMDSSPSPSYFDPQDLTTRQQFRRYGKRHSTSGASIQQDNSASKLSQTGLFYDGQSIH 64
            EMAMDS     +FDPQDLTTR++FRRYGKRH  SGAS++QD SASKLS++GLFYDGQ+IH
Sbjct: 4    EMAMDSP----FFDPQDLTTREKFRRYGKRHLNSGASVEQDYSASKLSESGLFYDGQNIH 59

Query: 65   SPTNAALVLENIKQEVESLDADYLEERAQHSSRRRLSADAHGVPGMDAGFYSERHSLKAC 124
            SPTNAAL+LENIKQEVESLDADYL++++ +SSR+R SAD  G+PGMD GF S R+SLKAC
Sbjct: 60   SPTNAALILENIKQEVESLDADYLDDKSLYSSRKRSSADVPGIPGMDDGFDSVRYSLKAC 119

Query: 125  KQEDESVGDGAETVFTLYASLLDSALQGFMPIPDLILRFENACRDVSESIRYGLNVRHRV 184
            KQE +S+GD A+ +F  +ASL D++L G MPIPDLILRFEN CR+VSESIRYGLN+RHRV
Sbjct: 120  KQEGDSLGDDADNIFNSFASLFDTSLTGMMPIPDLILRFENECRNVSESIRYGLNIRHRV 179

Query: 185  VEDKLMRQKAQLLLDEAATWSLLWFLYGKGNISLTLDVQYFKNLLCLCPQLCYDIWFFKL 244
            VEDKLMRQKAQLLLDEAATWSLLWFLYG+                               
Sbjct: 180  VEDKLMRQKAQLLLDEAATWSLLWFLYGEE------------------------------ 209

Query: 245  TEELSKEKILVSDTSHVVACEFVAEDHAAQLFLRIVQWLEGLASKALDLEVKVRGSHVGS 304
            TEELSKEKILV  TSH++ACEFV EDH AQL LRIVQWLEGLASKALDLE KVRGSHVGS
Sbjct: 210  TEELSKEKILVKQTSHLMACEFVTEDHIAQLCLRIVQWLEGLASKALDLEAKVRGSHVGS 269

Query: 305  YLPNSGVWHHTQRYLKKGTSDMNIVHHLDFDAPTRENANLLPDDKKQDESLLEDVWTLLR 364
            YLP+SGVWHHTQRYL KGTSD N+VHHLDFDAPTRENAN+LPDDKKQDESLLEDVWTLLR
Sbjct: 270  YLPSSGVWHHTQRYLNKGTSDRNVVHHLDFDAPTRENANILPDDKKQDESLLEDVWTLLR 329

Query: 365  AGRLEEACGLCRSAGQPWRAASLCPFGGLSQFPSVEALVKNGKNRTLQAVEFESGIGHQW 424
            AGRLEEACGLCRSAGQPWRA+SLCPFGGL+ FPSVEAL KNGKNRTLQAVEFESGIGHQW
Sbjct: 330  AGRLEEACGLCRSAGQPWRASSLCPFGGLNLFPSVEALAKNGKNRTLQAVEFESGIGHQW 389

Query: 425  HLWKWASYCASEKIAEQGGKYEAAVYGAQCSNLKRMLPLCTDWESACWAMAKSWLDVQVD 484
            HLWKWASYCASEKI+E GGKYEAAVY AQCSNL++MLPLCTDWESACWAMAKSWLDVQ+D
Sbjct: 390  HLWKWASYCASEKISELGGKYEAAVYAAQCSNLRQMLPLCTDWESACWAMAKSWLDVQID 449

Query: 485  MEVTRSLPGG-VDQLRAFGDVIDGSHGHVDGSLEPSNGPENWPIQVLNQQPRQLSSLLQK 543
            +EVTRSLPGG V+QL  FGDV+D S G VDGS +PSNGPENWPIQVLNQQPRQLSSLLQK
Sbjct: 450  LEVTRSLPGGGVNQLGTFGDVMDRSPGQVDGSFDPSNGPENWPIQVLNQQPRQLSSLLQK 509

Query: 544  LHSGEMIYETVTRQCKEQQRQIQMTLMLGDIPRVLDLIWSWIAPSDDDQNVFRPHGDPQM 603
            LHSGEMI+ETVTRQCKEQQRQIQMTLML DIPRVLDLIWSWIAP +DDQNVFRPHGDPQM
Sbjct: 510  LHSGEMIHETVTRQCKEQQRQIQMTLMLADIPRVLDLIWSWIAPVEDDQNVFRPHGDPQM 569

Query: 604  IRFGAHLVLVLRYL--IADEIKGAFMDKIMSVGDHILHMYAMFLFSKEHEELVGIYASQL 661
            IRFGAHLVLVLRYL    +E+KGA MDKI++VGDHILH+YA FLFSKEHEELVGIYASQL
Sbjct: 570  IRFGAHLVLVLRYLPEAREEMKGALMDKILTVGDHILHLYAKFLFSKEHEELVGIYASQL 629

Query: 662  ARHRCIDLFVHMMELRLHSSVHVKYKIFLSAMEYLPFSSEDDSKGNFEDIIESVLMRSRE 721
            ARHRCIDLFV+MME RLHSSVHVKYKIFLSAMEYLPFS  D+SKG FEDIIE VL+RSRE
Sbjct: 630  ARHRCIDLFVYMMEFRLHSSVHVKYKIFLSAMEYLPFSLMDESKGCFEDIIERVLLRSRE 689

Query: 722  IKVGKYDSLSDVAEQHRLQSLQKAKVIQWLCFTPPSTITNVKDVSKKLLLRALVHSNILF 781
            IK+GKYD+LSDVAEQHR QSL+KAKVIQWLCFTPPSTI NVKDVSKKLLLRAL+HSN+LF
Sbjct: 690  IKIGKYDNLSDVAEQHRQQSLEKAKVIQWLCFTPPSTIANVKDVSKKLLLRALIHSNVLF 749

Query: 782  REFALISMWRVPGMPIGAHTALGFLAEPLKQLAETLETSEDDNIFEDLREFQDWREYYSC 841
            REFALISMWRVP MPIGAHTALGFLAEPLKQLAETLE S+D N+FEDLREF++WREYYSC
Sbjct: 750  REFALISMWRVPAMPIGAHTALGFLAEPLKQLAETLEISDDHNVFEDLREFEEWREYYSC 809

Query: 842  DGTYRKWLKVELENAEVPVSELSLEEKERAVSAAKETLDASLSLLERKETPWLASIDQTY 901
            D TYR WLK+E ENAEVPVSELSLEEKERA+SAAKETL ASLSLLER+ET WLASID  Y
Sbjct: 810  DATYRNWLKIESENAEVPVSELSLEEKERAISAAKETLTASLSLLERRETHWLASIDNIY 869

Query: 902  ESAEPVFLELHATAMLCLPSGECMCPDATVCTTLTSALYSSAGDEVVLNRQLTVNVSISS 961
            ESAE VFLELHATAMLCLPSG+C+CPDATVCTTLTSALYSSAGDEVV NRQL VN +ISS
Sbjct: 870  ESAESVFLELHATAMLCLPSGDCLCPDATVCTTLTSALYSSAGDEVVSNRQLVVNATISS 929

Query: 962  RDNYCIDVVLRCLAVAGDGIGPHDFNDGGILGTIMAAGFKGELPRFQAGITMEISRLDAW 1021
            RD+YCIDVVLRCLA+ GDG+ PHDFNDGGIL TI+AAGFKGELPRFQAG+ MEISRLDAW
Sbjct: 930  RDHYCIDVVLRCLAIVGDGLRPHDFNDGGILSTIIAAGFKGELPRFQAGVAMEISRLDAW 989

Query: 1022 YSDKSGTLECPATYIVKGLCRRCCLPEVILRSMQVSVSLMGSGVLPDCHDTLVELVGSPE 1081
            YSD+ G LE PATYIVKGLCRRCCLPEV+LR MQVSVSLMGSG  PD HD L+ELVGSPE
Sbjct: 990  YSDQDGNLEFPATYIVKGLCRRCCLPEVVLRCMQVSVSLMGSGDQPDSHDNLIELVGSPE 1049

Query: 1082 TQFVHXXXXXXXXXXXXXXXXYSICKMELLEE 1113
            T+F+                 YSICK+E  +E
Sbjct: 1050 TRFLDLFSQQQLQEFLLMEREYSICKLEHTQE 1081