Miyakogusa Predicted Gene

Lj3g3v2576110.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2576110.1 tr|C1EBJ0|C1EBJ0_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_108852,29.64,2e-18,CIA30,NADH:ubiquinone oxidoreductase
intermediate-associated protein 30; COMPLEX I
INTERMEDIATE-ASSO,CUFF.44224.1
         (219 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g022330.1 | NADH dehydrogenase 1 alpha subcomplex, assembl...   414   e-116
Medtr8g087310.1 | NAD(P)-binding rossmann-fold protein | HC | ch...    69   2e-12
Medtr8g087310.2 | NAD(P)-binding rossmann-fold protein | HC | ch...    69   4e-12

>Medtr8g022330.1 | NADH dehydrogenase 1 alpha subcomplex, assembly
           factor 1 | HC | chr8:7919583-7915573 | 20130731
          Length = 230

 Score =  414 bits (1063), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/219 (89%), Positives = 210/219 (95%)

Query: 1   MSRLRRLFQSSMDATKRVISGSFDDLMPPPERYIFSFNSKQELSKWHLYSDSEYGGLSSA 60
           MSR+RRLFQ+SMDATK+ ISGSFDDLMPPPE+YIF+FNSKQELSKWHLYSDSE+GGLSSA
Sbjct: 1   MSRIRRLFQASMDATKKAISGSFDDLMPPPEKYIFNFNSKQELSKWHLYSDSEFGGLSSA 60

Query: 61  SLQITESENGQNSGIFSGNLSLDVTPGSKWNISRGGFCGMRSKKFDGFIDLDSYDTIAMK 120
           SLQI ESENG+ +GIFSGNLS +VT G+KWNISRGGFCGMRSKKFDGFIDLDSYDTIAMK
Sbjct: 61  SLQIPESENGKTTGIFSGNLSFEVTQGAKWNISRGGFCGMRSKKFDGFIDLDSYDTIAMK 120

Query: 121 LKGDGRCYISTIYTENWVNSPGQMEDNSWQAFVYVPKGNWYIAKIPLARYLPTWRGNVID 180
           LKGDGR YISTIYTENWVNSPGQMEDNSWQ+FVYVPK NWYIAKIPLARY+PTWRGNVID
Sbjct: 121 LKGDGRSYISTIYTENWVNSPGQMEDNSWQSFVYVPKDNWYIAKIPLARYVPTWRGNVID 180

Query: 181 AEIEMNPSRVLGMSLSVNAEGGVPDARSGPGDFRVELDW 219
           AEIEMNPSRVLGMS SVNAEGGVP ARSGPGDFR+EL+W
Sbjct: 181 AEIEMNPSRVLGMSFSVNAEGGVPGARSGPGDFRLELEW 219


>Medtr8g087310.1 | NAD(P)-binding rossmann-fold protein | HC |
           chr8:36100665-36095176 | 20130731
          Length = 478

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 28/168 (16%)

Query: 35  FSFNSKQELSKWHLYSDSEYGGLSSASLQITE--SENGQNSGIFSGNLSLDVTPGSKWNI 92
           F  +S ++LS W    D   GG+S ++ QI    SENG  +G+F G LS         + 
Sbjct: 140 FEGDSYRQLS-WGALDDVVMGGVSESTFQIDPNGSENGGPTGVFKGVLS---------SA 189

Query: 93  SRGGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQMEDNSWQAF 152
           + GGF  +R+K F    DL +YD +  +LKGDGR Y   + T              W A 
Sbjct: 190 NNGGFTSIRTKNFSEPEDLSAYDGLEFRLKGDGRRYKVVVRTS-----------ADWDAL 238

Query: 153 VY-----VPKGNWYIAKIPLARYLPTWRGNVIDAEIEMNPSRVLGMSL 195
            Y       KG W   ++P +   P +R   +      +PS V  + L
Sbjct: 239 GYTIGFDTEKGKWQSIRLPFSSLRPIFRAKTVSDAPPFDPSNVASLQL 286


>Medtr8g087310.2 | NAD(P)-binding rossmann-fold protein | HC |
           chr8:36100665-36095176 | 20130731
          Length = 597

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 30/173 (17%)

Query: 32  RYIFSF--NSKQELSKWHLYSDSEYGGLSSASLQITE--SENGQNSGIFSGNLSLDVTPG 87
           + +F F  +S ++LS W    D   GG+S ++ QI    SENG  +G+F G LS      
Sbjct: 254 KLLFGFEGDSYRQLS-WGALDDVVMGGVSESTFQIDPNGSENGGPTGVFKGVLS------ 306

Query: 88  SKWNISRGGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQMEDN 147
              + + GGF  +R+K F    DL +YD +  +LKGDGR Y   + T             
Sbjct: 307 ---SANNGGFTSIRTKNFSEPEDLSAYDGLEFRLKGDGRRYKVVVRT-----------SA 352

Query: 148 SWQAFVY-----VPKGNWYIAKIPLARYLPTWRGNVIDAEIEMNPSRVLGMSL 195
            W A  Y       KG W   ++P +   P +R   +      +PS V  + L
Sbjct: 353 DWDALGYTIGFDTEKGKWQSIRLPFSSLRPIFRAKTVSDAPPFDPSNVASLQL 405