Miyakogusa Predicted Gene

Lj3g3v2576110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2576110.1 tr|C1EBJ0|C1EBJ0_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_108852,29.64,2e-18,CIA30,NADH:ubiquinone oxidoreductase
intermediate-associated protein 30; COMPLEX I
INTERMEDIATE-ASSO,CUFF.44224.1
         (219 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17350.1 | Symbols:  | NADH:ubiquinone oxidoreductase interme...   342   2e-94
AT1G72420.1 | Symbols:  | NADH:ubiquinone oxidoreductase interme...   328   2e-90
AT1G17350.2 | Symbols:  | NADH:ubiquinone oxidoreductase interme...   325   2e-89
AT4G18810.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfami...    57   7e-09
AT4G18810.2 | Symbols:  | NAD(P)-binding Rossmann-fold superfami...    57   8e-09

>AT1G17350.1 | Symbols:  | NADH:ubiquinone oxidoreductase
           intermediate-associated protein 30 |
           chr1:5942391-5944272 FORWARD LENGTH=227
          Length = 227

 Score =  342 bits (876), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 158/220 (71%), Positives = 191/220 (86%), Gaps = 1/220 (0%)

Query: 1   MSRLRRLFQSSMDATKRVISGSFDDLMPPPERYIFSFNSKQELSKWHLYSDSEYGGLSSA 60
           MSR R L Q+S++ATK+ ++ + ++ +PP E++IF F+SK++L KWHLYSDSEYGGLSSA
Sbjct: 1   MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60

Query: 61  SLQITESENGQN-SGIFSGNLSLDVTPGSKWNISRGGFCGMRSKKFDGFIDLDSYDTIAM 119
           SL+I +  +G + +G+FSGNLS+D++ GSKWNISR GFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61  SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query: 120 KLKGDGRCYISTIYTENWVNSPGQMEDNSWQAFVYVPKGNWYIAKIPLARYLPTWRGNVI 179
           +++GDGRCYISTIYTENWVNSPGQ EDNSWQAFV+ PK +WY AKIPLARYLPTWRGNVI
Sbjct: 121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKIPLARYLPTWRGNVI 180

Query: 180 DAEIEMNPSRVLGMSLSVNAEGGVPDARSGPGDFRVELDW 219
           D E+EMNP RVLGMSLSVNAEGG   A+SG GDFRVE+DW
Sbjct: 181 DVEMEMNPGRVLGMSLSVNAEGGAVGAKSGAGDFRVEIDW 220


>AT1G72420.1 | Symbols:  | NADH:ubiquinone oxidoreductase
           intermediate-associated protein 30 |
           chr1:27261367-27263186 REVERSE LENGTH=228
          Length = 228

 Score =  328 bits (840), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 154/221 (69%), Positives = 187/221 (84%), Gaps = 2/221 (0%)

Query: 1   MSRLRRLFQSSMDATKRVISGSFDDLMPPPERYIFSFNSKQELSKWHLYSDSEYGGLSSA 60
           MSR R L+Q+S++ATK+ ++   ++ +PP E+ IF FNSK++L  WHLYSDSEYGGLSSA
Sbjct: 1   MSRFRSLWQASVNATKKALTWELEEWVPPVEKCIFKFNSKEDLKTWHLYSDSEYGGLSSA 60

Query: 61  SLQITESENGQN-SGIFSGNLSLDVTPGSKWNISRGGFCGMRSKKFDGFIDLDSYDTIAM 119
           SL+I +  N  + +G+FSGNLS D+  GSKWNI+R GFCGMRSKKFDGFIDL+ YD+IA+
Sbjct: 61  SLEIKDGGNRSDCNGVFSGNLSTDMREGSKWNINRSGFCGMRSKKFDGFIDLEGYDSIAL 120

Query: 120 KLKGDGRCYISTIYTENWVNSPGQMEDNSWQAFVYVPKGNWYIAKIPLARYLPTWRGNVI 179
           +LKGDGRCYISTIYTENWVNSPGQ EDNSWQAFV+ PKGNWY AK+PL RYLPTW+GNVI
Sbjct: 121 RLKGDGRCYISTIYTENWVNSPGQAEDNSWQAFVFAPKGNWYTAKVPLTRYLPTWKGNVI 180

Query: 180 DAEIEMNPSRVLGMSLSVNAE-GGVPDARSGPGDFRVELDW 219
           DAE+EMNP  V+GMSLSVNA+ GG   A+SG GDF+VE+DW
Sbjct: 181 DAEMEMNPGHVVGMSLSVNAQGGGFIGAKSGAGDFQVEIDW 221


>AT1G17350.2 | Symbols:  | NADH:ubiquinone oxidoreductase
           intermediate-associated protein 30 |
           chr1:5942391-5944330 FORWARD LENGTH=236
          Length = 236

 Score =  325 bits (832), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 186/223 (83%), Gaps = 9/223 (4%)

Query: 1   MSRLRRLFQSSMDATKRVISGSFDDLMPPPERYIFSFNSKQELSKWHLYSDSEYGGLSSA 60
           MSR R L Q+S++ATK+ ++ + ++ +PP E++IF F+SK++L KWHLYSDSEYGGLSSA
Sbjct: 1   MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60

Query: 61  SLQITESENGQN-SGIFSGNLSLDVTPGSKWNISRGGFCGMRSKKFDGFIDLDSYDTIAM 119
           SL+I +  +G + +G+FSGNLS+D++ GSKWNISR GFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61  SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query: 120 KLKGDGRCYISTIYTENWVNSPGQMEDNSWQAFVYVPKGNWYIAK--------IPLARYL 171
           +++GDGRCYISTIYTENWVNSPGQ EDNSWQAFV+ PK +WY AK        IPLARYL
Sbjct: 121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKASPTTSIDIPLARYL 180

Query: 172 PTWRGNVIDAEIEMNPSRVLGMSLSVNAEGGVPDARSGPGDFR 214
           PTWRGNVID E+EMNP RVLGMSLSVNAEGG   A+SG GDFR
Sbjct: 181 PTWRGNVIDVEMEMNPGRVLGMSLSVNAEGGAVGAKSGAGDFR 223


>AT4G18810.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfamily
           protein | chr4:10322622-10325735 REVERSE LENGTH=596
          Length = 596

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 19/153 (12%)

Query: 46  WHLYSDSEYGGLSSAS--LQITESENGQNSGIFSGNLSLDVTPGSKWNISRGGFCGMRSK 103
           W    D   GG+S ++  + +T  ENG  +GIF G +S           + GGF  +R+K
Sbjct: 268 WGALDDVVMGGVSESNFIVDLTAGENGGPTGIFKGIVS---------TTNNGGFTSVRTK 318

Query: 104 KFDGFIDLDSYDTIAMKLKGDGRCYISTIYT-ENWVNSPGQMEDNSWQAFVYVPKGNWYI 162
            F    ++ +YD + ++LKGDG  Y   + T ++W       +   + A      G W  
Sbjct: 319 NFPEAENVSAYDGLELRLKGDGLRYKLIVRTSQDW-------DTVGYTASFDTSPGQWQS 371

Query: 163 AKIPLARYLPTWRGNVIDAEIEMNPSRVLGMSL 195
            ++P +   P +R   +      N S ++ + L
Sbjct: 372 VRLPFSSLRPVFRARTVTDAPPFNASSIISLQL 404


>AT4G18810.2 | Symbols:  | NAD(P)-binding Rossmann-fold superfamily
           protein | chr4:10322263-10325735 REVERSE LENGTH=627
          Length = 627

 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 19/153 (12%)

Query: 46  WHLYSDSEYGGLSSAS--LQITESENGQNSGIFSGNLSLDVTPGSKWNISRGGFCGMRSK 103
           W    D   GG+S ++  + +T  ENG  +GIF G +S           + GGF  +R+K
Sbjct: 268 WGALDDVVMGGVSESNFIVDLTAGENGGPTGIFKGIVS---------TTNNGGFTSVRTK 318

Query: 104 KFDGFIDLDSYDTIAMKLKGDGRCYISTIYT-ENWVNSPGQMEDNSWQAFVYVPKGNWYI 162
            F    ++ +YD + ++LKGDG  Y   + T ++W       +   + A      G W  
Sbjct: 319 NFPEAENVSAYDGLELRLKGDGLRYKLIVRTSQDW-------DTVGYTASFDTSPGQWQS 371

Query: 163 AKIPLARYLPTWRGNVIDAEIEMNPSRVLGMSL 195
            ++P +   P +R   +      N S ++ + L
Sbjct: 372 VRLPFSSLRPVFRARTVTDAPPFNASSIISLQL 404