Miyakogusa Predicted Gene

Lj3g3v2438640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2438640.1 tr|B9IDX7|B9IDX7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_824545 PE=4
SV=1,41.91,0.000000000007,SUBFAMILY NOT NAMED,NULL;
TOPOISOMERASE-RELATED PROTEIN,NULL; seg,NULL,CUFF.44001.1
         (443 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g027790.1 | nucleotidyltransferase | HC | chr8:10138672-10...   601   e-172
Medtr8g027790.2 | nucleotidyltransferase | HC | chr8:10139519-10...   594   e-170

>Medtr8g027790.1 | nucleotidyltransferase | HC |
            chr8:10138672-10130996 | 20130731
          Length = 1343

 Score =  601 bits (1549), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 311/453 (68%), Positives = 343/453 (75%), Gaps = 10/453 (2%)

Query: 1    MASDMSERGTGPSPGTSMHVPRHQTSGFEATQTSGPDSPLTIAPVLLGPGSRHRAIGNSG 60
            M SDM ER T P+ G+S+ V RHQ SGFEA QTSG DS   IAPV+LGPGSRHRA+ NSG
Sbjct: 886  MQSDMLERSTEPATGSSLQVQRHQLSGFEAAQTSGSDSQSPIAPVILGPGSRHRAVDNSG 945

Query: 61   VVPYAFYPTGPPVPFVTMVPF--YNFSTESSDTSTNNFSVEEGADNSGSGPNFDSSEGYN 118
            VVP+AFYPTGPPVPFVTM+PF  YNF TE S+TST+NF+ EEGA+NS SG NFDSSEGYN
Sbjct: 946  VVPFAFYPTGPPVPFVTMLPFPLYNFPTEPSETSTSNFTGEEGAENSDSGLNFDSSEGYN 1005

Query: 119  RSESV---NSMTRAAIESSEHKADILNSDFVSHWQNLQFGRFCQTSRHXXXXXXXXXXXX 175
             SE     NSM RA IESS+HK DIL+SDF SHW NLQFGR CQ                
Sbjct: 1006 HSEVSSPSNSMRRAGIESSDHKPDILHSDFASHWSNLQFGRLCQGPSQPPSMMHPSPAMV 1065

Query: 176  XXAYLQGRYPLDGPGRP---DMNLFAQLMSYGPRVVPAAPLQSVSTRPTNMYQRFADDMP 232
               YLQGRYP DGPGRP   +MNL  QLM+YGPR+VP  PLQSVS RPT++YQ F +DMP
Sbjct: 1066 PPVYLQGRYPWDGPGRPPSANMNLATQLMNYGPRLVPVPPLQSVSNRPTHIYQHFVEDMP 1125

Query: 233  RYRSGTGTYLPNPKASARDRHPTXXXXXXXXXXXXXHHSDREGNWNMNPKLRATGRGHNR 292
            RYRSGTGTYLPNPK S RDRH T             HH DREGNWNMN KLR+TGRGHNR
Sbjct: 1126 RYRSGTGTYLPNPKVSVRDRHSTNTRRGNYNYDRSDHHGDREGNWNMNSKLRSTGRGHNR 1185

Query: 293  NQAEKLNSKPERL-TSESRGERPWNAHRHDSFISHQNGPVRAGSSQNNPANAAYGMYSIP 351
            NQ EK  SK ERL TSE+R ERPW++HRHDSFI HQN PVR  SSQN+ AN AYGMYSIP
Sbjct: 1186 NQGEKPISKSERLATSENRSERPWSSHRHDSFIPHQNSPVRGNSSQNSHANVAYGMYSIP 1245

Query: 352  GMNPGGVSSSGQPMPSVVMLYPYDHSGGYSPSAEQLEFGSLGPMGFPGVNELAHPNEGSH 411
            GMNP GVSS+G  MPS+VMLYPYDH+ GYS  AEQLEFGS+GPMGF    EL+ PNEGS 
Sbjct: 1246 GMNPSGVSSNGPTMPSLVMLYPYDHNTGYSSPAEQLEFGSMGPMGFSSTTELSQPNEGSR 1305

Query: 412  SGE-ALEDQRFHGASAQRASPDQPSSPHISRGP 443
            SG   LE+QRFHG  AQR+SPDQPSSPH+SRGP
Sbjct: 1306 SGNGTLEEQRFHGGPAQRSSPDQPSSPHVSRGP 1338


>Medtr8g027790.2 | nucleotidyltransferase | HC |
            chr8:10139519-10130668 | 20130731
          Length = 1342

 Score =  594 bits (1532), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 310/453 (68%), Positives = 342/453 (75%), Gaps = 11/453 (2%)

Query: 1    MASDMSERGTGPSPGTSMHVPRHQTSGFEATQTSGPDSPLTIAPVLLGPGSRHRAIGNSG 60
            M SDM ER T P+ G+S+ V RHQ SGFEA QTSG DS   IAPV+LGPGSRHRA+ NSG
Sbjct: 886  MQSDMLERSTEPATGSSLQVQRHQLSGFEAAQTSGSDSQSPIAPVILGPGSRHRAVDNSG 945

Query: 61   VVPYAFYPTGPPVPFVTMVPF--YNFSTESSDTSTNNFSVEEGADNSGSGPNFDSSEGYN 118
            VVP+AFYPTGPPVPFVTM+PF  YNF TE S+TST+NF+ EEGA+NS SG NFDSSEGYN
Sbjct: 946  VVPFAFYPTGPPVPFVTMLPFPLYNFPTEPSETSTSNFTGEEGAENSDSGLNFDSSEGYN 1005

Query: 119  RSESV---NSMTRAAIESSEHKADILNSDFVSHWQNLQFGRFCQTSRHXXXXXXXXXXXX 175
             SE     NSM RA IESS+HK DIL+SDF SHW NLQFGR CQ                
Sbjct: 1006 HSEVSSPSNSMRRAGIESSDHKPDILHSDFASHWSNLQFGRLCQGPSQPPSMMHPSPAMV 1065

Query: 176  XXAYLQGRYPLDGPGRP---DMNLFAQLMSYGPRVVPAAPLQSVSTRPTNMYQRFADDMP 232
               YLQGRYP DGPGRP   +MNL  QLM+YGPR+VP  PLQSVS RPT++YQ F +DMP
Sbjct: 1066 PPVYLQGRYPWDGPGRPPSANMNLATQLMNYGPRLVPVPPLQSVSNRPTHIYQHFVEDMP 1125

Query: 233  RYRSGTGTYLPNPKASARDRHPTXXXXXXXXXXXXXHHSDREGNWNMNPKLRATGRGHNR 292
            RYRSGTGTYLPNP  S RDRH T             HH DREGNWNMN KLR+TGRGHNR
Sbjct: 1126 RYRSGTGTYLPNP-VSVRDRHSTNTRRGNYNYDRSDHHGDREGNWNMNSKLRSTGRGHNR 1184

Query: 293  NQAEKLNSKPERL-TSESRGERPWNAHRHDSFISHQNGPVRAGSSQNNPANAAYGMYSIP 351
            NQ EK  SK ERL TSE+R ERPW++HRHDSFI HQN PVR  SSQN+ AN AYGMYSIP
Sbjct: 1185 NQGEKPISKSERLATSENRSERPWSSHRHDSFIPHQNSPVRGNSSQNSHANVAYGMYSIP 1244

Query: 352  GMNPGGVSSSGQPMPSVVMLYPYDHSGGYSPSAEQLEFGSLGPMGFPGVNELAHPNEGSH 411
            GMNP GVSS+G  MPS+VMLYPYDH+ GYS  AEQLEFGS+GPMGF    EL+ PNEGS 
Sbjct: 1245 GMNPSGVSSNGPTMPSLVMLYPYDHNTGYSSPAEQLEFGSMGPMGFSSTTELSQPNEGSR 1304

Query: 412  SGE-ALEDQRFHGASAQRASPDQPSSPHISRGP 443
            SG   LE+QRFHG  AQR+SPDQPSSPH+SRGP
Sbjct: 1305 SGNGTLEEQRFHGGPAQRSSPDQPSSPHVSRGP 1337