Miyakogusa Predicted Gene

Lj3g3v2438640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2438640.1 tr|B9IDX7|B9IDX7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_824545 PE=4
SV=1,41.91,0.000000000007,SUBFAMILY NOT NAMED,NULL;
TOPOISOMERASE-RELATED PROTEIN,NULL; seg,NULL,CUFF.44001.1
         (443 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61690.1 | Symbols:  | nucleotidyltransferases | chr3:2282834...   344   6e-95

>AT3G61690.1 | Symbols:  | nucleotidyltransferases |
            chr3:22828349-22833477 FORWARD LENGTH=1303
          Length = 1303

 Score =  344 bits (883), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 219/463 (47%), Positives = 282/463 (60%), Gaps = 44/463 (9%)

Query: 2    ASDMSERGTGPSPGT-SMHVPRHQTSGFEATQTSGPDSPLTIAPVLLGPGSRHRAIGNSG 60
            ++++ +R  GP P   S  V RHQ  G E  Q SG +S +++AP +LG G +   + NSG
Sbjct: 862  SNEIIDRDLGPRPTVPSFQVQRHQIHGHELAQASGSESTVSLAPFILGHGMQQNEVDNSG 921

Query: 61   VVPYAFYPTGPPVPFVTMVPFYNFST---ESSDTSTNNFSVEEGADNSGSGPNFDSSEGY 117
               Y FYPTGPPVP V M+P YN+      +SD   ++ SV+EG +N     +FDSS G 
Sbjct: 922  ---YTFYPTGPPVPIVAMLPMYNYQAGGNATSDALASHHSVDEGVENHEPCKSFDSSRGL 978

Query: 118  NRSESVNSM--TR--AAIESSEHKADILNSDFVSHWQNLQFGRFCQTSRHXXXXXXXXXX 173
            ++SE V S   TR  ++ E  E K DILN DF+SHWQNLQ+GR CQ S+H          
Sbjct: 979  DQSEIVVSSHSTRMGSSAEQVERKNDILNGDFISHWQNLQYGRSCQNSQHPPVLYPAPVV 1038

Query: 174  XXXXAYLQGRYPLDGPGRPD--MNLFAQLMSYGPRVVPAAPLQSVSTRPTNMYQRFADDM 231
                AYLQGR P DGPGRP    N   QLM+YGPR+VP AP+Q VSTRP N+Y R+A++ 
Sbjct: 1039 VPP-AYLQGRLPWDGPGRPLAYTNAVNQLMTYGPRLVPVAPVQPVSTRPPNIYPRYANET 1097

Query: 232  PRYRSGTGTYLPNPKASARDRHPTX-XXXXXXXXXXXXHHSDREGNWNMNPKLRATGRGH 290
            PRYRSGTGTY PNPK S R++ PT              HHSDREGNWN   K R +GR H
Sbjct: 1098 PRYRSGTGTYFPNPKISPREQRPTSGMRRGNYGHDRTDHHSDREGNWNAGSKTRGSGRNH 1157

Query: 291  -NRNQAEKLNSKPERLTSESRGERPW-NAHRHD--SFISH--QNGPVRAGSSQNNPANAA 344
             NRNQA+   +KP  ++ + R +R W +++RH+  S+ +H  QNGP+R+ +SQ+   N A
Sbjct: 1158 NNRNQAD---NKP--ISRQDRSDRHWGSSYRHESSSYSAHHSQNGPIRSNTSQDASGNIA 1212

Query: 345  YGMYSI-PGMNPGGVSSS-GQPMPSVVMLYPYDHSGGYSPSAEQLEFGSLGPMGFPGVNE 402
            YGMY + PGM    V+SS G  +PSV+M YPY H+  Y+  +E  E+GSLGP G     E
Sbjct: 1213 YGMYRLPPGMKQNSVTSSEGHNVPSVMMFYPYGHNNVYNSPSEHNEYGSLGPGG-----E 1267

Query: 403  LAHPNEGSHSGEALEDQ-RFHG--ASAQRASPDQPSSPHISRG 442
              H N+        EDQ RF G  ASA  +SPD PSSPH  RG
Sbjct: 1268 APHLND--------EDQPRFRGAAASAHMSSPDDPSSPHFPRG 1302