Miyakogusa Predicted Gene

Lj3g3v2402900.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2402900.2 tr|B9IB00|B9IB00_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_573172 PE=4
SV=1,60,6e-16,seg,NULL,CUFF.43971.2
         (224 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g028015.1 | hypothetical protein | HC | chr8:10356254-1035...   222   2e-58
Medtr8g079890.1 | hypothetical protein | HC | chr8:34287064-3428...   136   2e-32

>Medtr8g028015.1 | hypothetical protein | HC |
           chr8:10356254-10354404 | 20130731
          Length = 218

 Score =  222 bits (566), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 103/116 (88%), Positives = 113/116 (97%)

Query: 1   MDPEVKKFGGGPRELTGAVDLISHFKLLPHYEFFCKRPLPVSVADTHYLHNVVGDTEVRK 60
           MDPE KKFGGGPRELTGAVDLISHFKL+PHYEFFCKRPLPVS+ADTHYLH+VVGDTEVRK
Sbjct: 1   MDPEGKKFGGGPRELTGAVDLISHFKLIPHYEFFCKRPLPVSIADTHYLHSVVGDTEVRK 60

Query: 61  GDGMQLDQLIQNASSSRDTNARIQPFDLDVLKEAFQLRETAPVDLPAADKGIPTIA 116
           GDGMQLD+LIQN S SR+T+ARIQPFDLD+LKE+FQLRETAP+DLPAA+KGIPTIA
Sbjct: 61  GDGMQLDELIQNTSFSRETSARIQPFDLDILKESFQLRETAPIDLPAAEKGIPTIA 116


>Medtr8g079890.1 | hypothetical protein | HC |
           chr8:34287064-34283126 | 20130731
          Length = 190

 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 83/112 (74%), Gaps = 1/112 (0%)

Query: 1   MDPEVKKFGGGPRELTGAVDLISHFKLLPHYEFFCKRPLPVSVADTHYLHNVVGDTEVRK 60
           MD E K FG G REL GA DL+S +KL P+YEFFCKR LP+S+++THYL NVVGDT+++K
Sbjct: 1   MDLEGKNFGRGTRELGGAHDLVSQYKLWPYYEFFCKRSLPLSISETHYLRNVVGDTKIKK 60

Query: 61  GDGMQLDQLIQNASSSRDTNARIQPFDLDVLKEAFQLRETAPVDLPAADKGI 112
           G+G++LDQL +N   + +    + PFDL+VL EAF+LRE  P  L  A KG+
Sbjct: 61  GEGVELDQLCKNTKMN-EKKPCLSPFDLNVLSEAFRLREMDPNHLSCAKKGL 111