Miyakogusa Predicted Gene
- Lj3g3v2402900.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v2402900.2 tr|B9IB00|B9IB00_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_573172 PE=4
SV=1,60,6e-16,seg,NULL,CUFF.43971.2
(224 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G19480.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 174 6e-44
AT5G19480.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 174 6e-44
AT5G12230.1 | Symbols: MED19A | MED19A; BEST Arabidopsis thalian... 173 8e-44
>AT5G19480.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G12230.1); Has 15754 Blast hits to 7644
proteins in 441 species: Archae - 6; Bacteria - 451;
Metazoa - 7628; Fungi - 1448; Plants - 1196; Viruses -
38; Other Eukaryotes - 4987 (source: NCBI BLink). |
chr5:6571828-6572929 FORWARD LENGTH=207
Length = 207
Score = 174 bits (440), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/116 (73%), Positives = 99/116 (85%), Gaps = 2/116 (1%)
Query: 1 MDPEVKKFGGGPRELTGAVDLISHFKLLPHYEFFCKRPLPVSVADTHYLHNVVGDTEVRK 60
M+ E KFGG PREL GA+DLI+ +KLLPH+EFFCKR LP S++D HYLHN+VGDTE+RK
Sbjct: 1 MESESVKFGG-PRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 59
Query: 61 GDGMQLDQLIQNAS-SSRDTNARIQPFDLDVLKEAFQLRETAPVDLPAADKGIPTI 115
G+GMQLDQLI NAS SSRDTNARIQPF LD LKEAF+L +TAPV+LP A+KG PT
Sbjct: 60 GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTT 115
>AT5G19480.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G12230.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:6571828-6572929
FORWARD LENGTH=207
Length = 207
Score = 174 bits (440), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/116 (73%), Positives = 99/116 (85%), Gaps = 2/116 (1%)
Query: 1 MDPEVKKFGGGPRELTGAVDLISHFKLLPHYEFFCKRPLPVSVADTHYLHNVVGDTEVRK 60
M+ E KFGG PREL GA+DLI+ +KLLPH+EFFCKR LP S++D HYLHN+VGDTE+RK
Sbjct: 1 MESESVKFGG-PRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRK 59
Query: 61 GDGMQLDQLIQNAS-SSRDTNARIQPFDLDVLKEAFQLRETAPVDLPAADKGIPTI 115
G+GMQLDQLI NAS SSRDTNARIQPF LD LKEAF+L +TAPV+LP A+KG PT
Sbjct: 60 GEGMQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTT 115
>AT5G12230.1 | Symbols: MED19A | MED19A; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G19480.2);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink). | chr5:3953915-3955285 REVERSE
LENGTH=221
Length = 221
Score = 173 bits (439), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 80/115 (69%), Positives = 98/115 (85%), Gaps = 1/115 (0%)
Query: 1 MDPEVKKFGGGPRELTGAVDLISHFKLLPHYEFFCKRPLPVSVADTHYLHNVVGDTEVRK 60
M+PE KFGG PREL GA DLIS FKL+ H+EFFCK+ LPVS++D+HYLHNVVGDTE+RK
Sbjct: 1 MEPERLKFGG-PRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRK 59
Query: 61 GDGMQLDQLIQNASSSRDTNARIQPFDLDVLKEAFQLRETAPVDLPAADKGIPTI 115
G+GMQLDQLI++ S SR+TN RIQPFD+D L+E+FQL + PV+LP A+KG PTI
Sbjct: 60 GEGMQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTI 114