Miyakogusa Predicted Gene

Lj3g3v2261390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2261390.1 Non Characterized Hit- tr|I3SU62|I3SU62_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.34,0,SYS1,Integral membrane protein SYS1-related; seg,NULL;
SYS1,NULL,CUFF.43747.1
         (152 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g011980.3 | integral membrane protein S (TGN-related) | HC...   199   8e-52
Medtr4g011980.2 | integral membrane protein S (TGN-related) | HC...    71   4e-13
Medtr4g011980.1 | integral membrane protein S (TGN-related) | HC...    71   4e-13

>Medtr4g011980.3 | integral membrane protein S (TGN-related) | HC |
           chr4:3183132-3180193 | 20130731
          Length = 152

 Score =  199 bits (506), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 117/152 (76%)

Query: 1   MFYGAVVWDPWLIVAQIVCLQCMYYIXXXXXXXXXXXXXXXXMSLVYFFDYVTISTSTVT 60
           MFYGAVVWDPWLIVAQIVCLQCMYYI                +SLVYFFDYVT++TSTVT
Sbjct: 1   MFYGAVVWDPWLIVAQIVCLQCMYYITLGLLLTVLVGTRVSRLSLVYFFDYVTVTTSTVT 60

Query: 61  GWXXXXXXXXXXXXXXXYMLYLIERAKKCLDFSATLYIIHLFLCIVYGGWPSAITWWIVN 120
           GW               YMLYLIER+KKCLDF+AT+YIIHL +CIVYGGWPS+I WWIVN
Sbjct: 61  GWCVCASFLLSSAAGAVYMLYLIERSKKCLDFAATIYIIHLCICIVYGGWPSSIAWWIVN 120

Query: 121 GTGIAVMALLGEYLCIRRELQEIPITRLRSNV 152
           GTGIA+MALLGEYLCIRREL+EIPI R RSNV
Sbjct: 121 GTGIALMALLGEYLCIRRELREIPIPRYRSNV 152


>Medtr4g011980.2 | integral membrane protein S (TGN-related) | HC
          | chr4:3183132-3182905 | 20130731
          Length = 75

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 46/62 (74%)

Query: 1  MFYGAVVWDPWLIVAQIVCLQCMYYIXXXXXXXXXXXXXXXXMSLVYFFDYVTISTSTVT 60
          MFYGAVVWDPWLIVAQIVCLQCMYYI                +SLVYFFDYVT++TSTVT
Sbjct: 1  MFYGAVVWDPWLIVAQIVCLQCMYYITLGLLLTVLVGTRVSRLSLVYFFDYVTVTTSTVT 60

Query: 61 GW 62
          GW
Sbjct: 61 GW 62


>Medtr4g011980.1 | integral membrane protein S (TGN-related) | HC
          | chr4:3183132-3182905 | 20130731
          Length = 75

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 46/62 (74%)

Query: 1  MFYGAVVWDPWLIVAQIVCLQCMYYIXXXXXXXXXXXXXXXXMSLVYFFDYVTISTSTVT 60
          MFYGAVVWDPWLIVAQIVCLQCMYYI                +SLVYFFDYVT++TSTVT
Sbjct: 1  MFYGAVVWDPWLIVAQIVCLQCMYYITLGLLLTVLVGTRVSRLSLVYFFDYVTVTTSTVT 60

Query: 61 GW 62
          GW
Sbjct: 61 GW 62