Miyakogusa Predicted Gene

Lj3g3v2174830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2174830.1 Non Characterized Hit- tr|C0HFA5|C0HFA5_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,48.81,0.0000000000001,seg,NULL; SHIKIMATE KINASE,NULL;
SKI,Shikimate kinase; CS,CS domain; HSP20-like
chaperones,HSP20-lik,CUFF.43623.1
         (392 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g029550.1 | inactive shikimate kinase-like protein | HC | ...   542   e-154
Medtr5g029550.2 | inactive shikimate kinase-like protein | HC | ...   377   e-104
Medtr5g029550.4 | inactive shikimate kinase-like protein | HC | ...   312   4e-85
Medtr5g029550.3 | inactive shikimate kinase-like protein | HC | ...   312   4e-85
Medtr1g009450.1 | shikimate kinase-like protein, putative | HC |...   118   8e-27

>Medtr5g029550.1 | inactive shikimate kinase-like protein | HC |
           chr5:12404496-12408916 | 20130731
          Length = 377

 Score =  542 bits (1396), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/369 (72%), Positives = 297/369 (80%), Gaps = 6/369 (1%)

Query: 26  FLFRHPTT--TSFHFSVSKPNVVXXXXXXXXXXXXXXXXHKFNPVLRPCKCSYTAPVPTT 83
           FL  +PTT  T   FS+ KPN                  +     L PCKCS+TAPV TT
Sbjct: 13  FLPPNPTTRKTFNFFSILKPNFNSLRSFSHSSLFSLSHKYP----LSPCKCSFTAPVSTT 68

Query: 84  TYEFSDGSSEMELRLNIGGLDIQSTRDISVDANDSSLAIKVLRSGSPLTLIETNPLFDRI 143
           TYEFSD +SEMELRLNIG +D++ST+DISVDAND+SL I+VL+SGSP+TLI+TNPLFDRI
Sbjct: 69  TYEFSDNASEMELRLNIGSMDVRSTKDISVDANDTSLTIRVLQSGSPITLIDTNPLFDRI 128

Query: 144 KPSETIWYIDEDQLVVNFKKQDPDLKWPDIMESWESLAAGSTQLLQGTSIYLVGDSTEIN 203
           KPSETIWYID+D LVVNFKK DP+LKWPDIMESWESLAAGS+QLL+GTSIYLVGDSTEIN
Sbjct: 129 KPSETIWYIDDDDLVVNFKKNDPELKWPDIMESWESLAAGSSQLLKGTSIYLVGDSTEIN 188

Query: 204 QKVAQELAIGLGYTPLNTKELLEAYTKQTVDSWLLAEGPDXXXXXXXXXXXXXXXYARAV 263
           QKVA+ELA GLGYTPL+TKELLE Y+ QTVDSWLLAEG D               + RA 
Sbjct: 189 QKVAEELATGLGYTPLSTKELLETYSNQTVDSWLLAEGSDSVAEGEGTVLESISSHVRAA 248

Query: 264 VATLGGKQGASRRSDKWQHLHAGFTVWLSQTEATDEDSAREEAHKSVKDSTIAYTNADVV 323
           VATLGGK GA+ RSDKW+HL+AGFTVWLSQTEA+DEDSAREE H++VKD   AYTNADVV
Sbjct: 249 VATLGGKHGAAGRSDKWRHLYAGFTVWLSQTEASDEDSAREETHRNVKDRITAYTNADVV 308

Query: 324 VKFQGWDPAYVKSVAQACLRALKQLILSDKKLPGKKSLYIRLGCRGDWPNIEPPGWDPSS 383
           VK QGWDPAY KSVAQ CL ALKQLILSDKKLPGKKSLYIRLGCRGDWPNI+PPGWDPSS
Sbjct: 309 VKLQGWDPAYAKSVAQGCLSALKQLILSDKKLPGKKSLYIRLGCRGDWPNIKPPGWDPSS 368

Query: 384 ESDVTLGTQ 392
           E   TLGTQ
Sbjct: 369 EGGETLGTQ 377


>Medtr5g029550.2 | inactive shikimate kinase-like protein | HC |
           chr5:12404496-12408916 | 20130731
          Length = 289

 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/276 (68%), Positives = 215/276 (77%), Gaps = 6/276 (2%)

Query: 26  FLFRHPTT--TSFHFSVSKPNVVXXXXXXXXXXXXXXXXHKFNPVLRPCKCSYTAPVPTT 83
           FL  +PTT  T   FS+ KPN                  +     L PCKCS+TAPV TT
Sbjct: 13  FLPPNPTTRKTFNFFSILKPNFNSLRSFSHSSLFSLSHKYP----LSPCKCSFTAPVSTT 68

Query: 84  TYEFSDGSSEMELRLNIGGLDIQSTRDISVDANDSSLAIKVLRSGSPLTLIETNPLFDRI 143
           TYEFSD +SEMELRLNIG +D++ST+DISVDAND+SL I+VL+SGSP+TLI+TNPLFDRI
Sbjct: 69  TYEFSDNASEMELRLNIGSMDVRSTKDISVDANDTSLTIRVLQSGSPITLIDTNPLFDRI 128

Query: 144 KPSETIWYIDEDQLVVNFKKQDPDLKWPDIMESWESLAAGSTQLLQGTSIYLVGDSTEIN 203
           KPSETIWYID+D LVVNFKK DP+LKWPDIMESWESLAAGS+QLL+GTSIYLVGDSTEIN
Sbjct: 129 KPSETIWYIDDDDLVVNFKKNDPELKWPDIMESWESLAAGSSQLLKGTSIYLVGDSTEIN 188

Query: 204 QKVAQELAIGLGYTPLNTKELLEAYTKQTVDSWLLAEGPDXXXXXXXXXXXXXXXYARAV 263
           QKVA+ELA GLGYTPL+TKELLE Y+ QTVDSWLLAEG D               + RA 
Sbjct: 189 QKVAEELATGLGYTPLSTKELLETYSNQTVDSWLLAEGSDSVAEGEGTVLESISSHVRAA 248

Query: 264 VATLGGKQGASRRSDKWQHLHAGFTVWLSQTEATDE 299
           VATLGGK GA+ RSDKW+HL+AGFTVWLSQTEA+DE
Sbjct: 249 VATLGGKHGAAGRSDKWRHLYAGFTVWLSQTEASDE 284


>Medtr5g029550.4 | inactive shikimate kinase-like protein | HC |
           chr5:12404513-12408916 | 20130731
          Length = 243

 Score =  312 bits (799), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 157/220 (71%), Positives = 178/220 (80%), Gaps = 6/220 (2%)

Query: 26  FLFRHPTT--TSFHFSVSKPNVVXXXXXXXXXXXXXXXXHKFNPVLRPCKCSYTAPVPTT 83
           FL  +PTT  T   FS+ KPN                  +     L PCKCS+TAPV TT
Sbjct: 13  FLPPNPTTRKTFNFFSILKPNFNSLRSFSHSSLFSLSHKYP----LSPCKCSFTAPVSTT 68

Query: 84  TYEFSDGSSEMELRLNIGGLDIQSTRDISVDANDSSLAIKVLRSGSPLTLIETNPLFDRI 143
           TYEFSD +SEMELRLNIG +D++ST+DISVDAND+SL I+VL+SGSP+TLI+TNPLFDRI
Sbjct: 69  TYEFSDNASEMELRLNIGSMDVRSTKDISVDANDTSLTIRVLQSGSPITLIDTNPLFDRI 128

Query: 144 KPSETIWYIDEDQLVVNFKKQDPDLKWPDIMESWESLAAGSTQLLQGTSIYLVGDSTEIN 203
           KPSETIWYID+D LVVNFKK DP+LKWPDIMESWESLAAGS+QLL+GTSIYLVGDSTEIN
Sbjct: 129 KPSETIWYIDDDDLVVNFKKNDPELKWPDIMESWESLAAGSSQLLKGTSIYLVGDSTEIN 188

Query: 204 QKVAQELAIGLGYTPLNTKELLEAYTKQTVDSWLLAEGPD 243
           QKVA+ELA GLGYTPL+TKELLE Y+ QTVDSWLLAEG D
Sbjct: 189 QKVAEELATGLGYTPLSTKELLETYSNQTVDSWLLAEGSD 228


>Medtr5g029550.3 | inactive shikimate kinase-like protein | HC |
           chr5:12404513-12408916 | 20130731
          Length = 243

 Score =  312 bits (799), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 157/220 (71%), Positives = 178/220 (80%), Gaps = 6/220 (2%)

Query: 26  FLFRHPTT--TSFHFSVSKPNVVXXXXXXXXXXXXXXXXHKFNPVLRPCKCSYTAPVPTT 83
           FL  +PTT  T   FS+ KPN                  +     L PCKCS+TAPV TT
Sbjct: 13  FLPPNPTTRKTFNFFSILKPNFNSLRSFSHSSLFSLSHKYP----LSPCKCSFTAPVSTT 68

Query: 84  TYEFSDGSSEMELRLNIGGLDIQSTRDISVDANDSSLAIKVLRSGSPLTLIETNPLFDRI 143
           TYEFSD +SEMELRLNIG +D++ST+DISVDAND+SL I+VL+SGSP+TLI+TNPLFDRI
Sbjct: 69  TYEFSDNASEMELRLNIGSMDVRSTKDISVDANDTSLTIRVLQSGSPITLIDTNPLFDRI 128

Query: 144 KPSETIWYIDEDQLVVNFKKQDPDLKWPDIMESWESLAAGSTQLLQGTSIYLVGDSTEIN 203
           KPSETIWYID+D LVVNFKK DP+LKWPDIMESWESLAAGS+QLL+GTSIYLVGDSTEIN
Sbjct: 129 KPSETIWYIDDDDLVVNFKKNDPELKWPDIMESWESLAAGSSQLLKGTSIYLVGDSTEIN 188

Query: 204 QKVAQELAIGLGYTPLNTKELLEAYTKQTVDSWLLAEGPD 243
           QKVA+ELA GLGYTPL+TKELLE Y+ QTVDSWLLAEG D
Sbjct: 189 QKVAEELATGLGYTPLSTKELLETYSNQTVDSWLLAEGSD 228


>Medtr1g009450.1 | shikimate kinase-like protein, putative | HC |
           chr1:1392339-1394152 | 20130731
          Length = 124

 Score =  118 bits (296), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 63/126 (50%), Positives = 73/126 (57%), Gaps = 20/126 (15%)

Query: 234 DSWLLAEGPDXXXXXXXXXXXXXXXYARAVVATLGGKQGASRRSDKWQHLHAGFTVWLSQ 293
           + WLLAEG D               + RA VATLGGK GA+ RSDK +HL+AGFTVWLS 
Sbjct: 13  NDWLLAEGSDSVAEGEGTVLESISSHVRAAVATLGGKHGAAGRSDKRRHLYAGFTVWLSH 72

Query: 294 TEATDEDSAREEAHKSVKDSTIAYTNADVVVKFQGWDPAYVKSVAQACLRALKQLILSDK 353
            EA+DEDSAREE H+++KD   AYTN                     CL ALKQLILS+K
Sbjct: 73  IEASDEDSAREETHRNIKDRITAYTN--------------------GCLSALKQLILSNK 112

Query: 354 KLPGKK 359
           KL   K
Sbjct: 113 KLSANK 118