Miyakogusa Predicted Gene

Lj3g3v2174830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v2174830.1 Non Chatacterized Hit- tr|C0HFA5|C0HFA5_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,48.81,0.0000000000001,seg,NULL; SHIKIMATE KINASE,NULL;
SKI,Shikimate kinase; CS,CS domain; HSP20-like
chaperones,HSP20-lik,CUFF.43623.1
         (392 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35500.1 | Symbols: SKL2 | shikimate kinase like 2 | chr2:149...   434   e-122

>AT2G35500.1 | Symbols: SKL2 | shikimate kinase like 2 |
           chr2:14914038-14915909 FORWARD LENGTH=387
          Length = 387

 Score =  434 bits (1117), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/322 (63%), Positives = 255/322 (79%), Gaps = 2/322 (0%)

Query: 64  KFNPVLRPCKCSYTAPVPTTTYEFSDGSSEMELRLNIGGLDIQSTRDISVDANDSSLAIK 123
           +FN     C C       T  YEF+DG  E+ELRL +   +I S +DISVDA+ +SLA+K
Sbjct: 61  RFNSF--SCNCLSAVSTSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLAVK 118

Query: 124 VLRSGSPLTLIETNPLFDRIKPSETIWYIDEDQLVVNFKKQDPDLKWPDIMESWESLAAG 183
             R+G  +TL+ETN LF++I PSETIWYIDEDQLVVN KK D +LKWPDI+ESWESL AG
Sbjct: 119 EKRNGLLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLTAG 178

Query: 184 STQLLQGTSIYLVGDSTEINQKVAQELAIGLGYTPLNTKELLEAYTKQTVDSWLLAEGPD 243
             QLL+G SIY+VGDSTEINQKV++ELA+GLGY+PL++KELLE+++KQT+DSW+LAEGPD
Sbjct: 179 MMQLLKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEGPD 238

Query: 244 XXXXXXXXXXXXXXXYARAVVATLGGKQGASRRSDKWQHLHAGFTVWLSQTEATDEDSAR 303
                          + R VV+TLGGK GA+ R+D+W+HL++GFTVW+SQTEATDE+SA+
Sbjct: 239 SVAEAESSVLESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFTVWVSQTEATDEESAK 298

Query: 304 EEAHKSVKDSTIAYTNADVVVKFQGWDPAYVKSVAQACLRALKQLILSDKKLPGKKSLYI 363
           EEA +S ++  I Y+NADVVVK QGWDP + KSVAQA L ALKQLI+SDK LPGKKSLYI
Sbjct: 299 EEARRSKQEREIGYSNADVVVKLQGWDPTHAKSVAQASLSALKQLIISDKGLPGKKSLYI 358

Query: 364 RLGCRGDWPNIEPPGWDPSSES 385
           RLGCRGDWPNI+PPGWDPSS++
Sbjct: 359 RLGCRGDWPNIKPPGWDPSSDT 380