Miyakogusa Predicted Gene

Lj3g3v1684640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1684640.1 Non Characterized Hit- tr|Q10HZ8|Q10HZ8_ORYSJ
Putative RNA binding protein OS=Oryza sativa subsp.
ja,37.66,0.00001,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
description,Nucleotide-binding, alpha-beta plait,CUFF.43003.1
         (251 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch...   305   2e-83
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch...   121   5e-28
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch...   111   6e-25
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch...   103   2e-22
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch...   100   1e-21
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch...   100   2e-21
Medtr7g053230.1 | hypothetical protein | LC | chr7:18719707-1871...    67   2e-11
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042...    59   6e-09
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042...    59   6e-09
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042...    59   6e-09
Medtr3g079200.1 | zinc finger CCCH domain protein | HC | chr3:35...    52   4e-07
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708...    52   4e-07
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182...    51   1e-06
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341...    50   2e-06

>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
           chr2:41853094-41847353 | 20130731
          Length = 428

 Score =  305 bits (782), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 165/263 (62%), Positives = 181/263 (68%), Gaps = 13/263 (4%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXYTAPVNTVP 56
           M+EMNGVYCSTRP RIS                                   TAPVNTVP
Sbjct: 167 MSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVP 226

Query: 57  PDYDINNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAI 116
           P+YD+NNTTI+VGNLDLN+SEEELKQNFLQFGEIVSVK+  GK  GFVQFGARASAEEAI
Sbjct: 227 PEYDVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKVHPGKACGFVQFGARASAEEAI 286

Query: 117 QKMXXXXXXXXXXXXSWGRTPTARQDMPGSWAPQMDPSQWNAYYGYGQ-GYEASYAYGAT 175
           QKM            SWGR  TARQD+PG W  Q+D SQW+AYYGYGQ GYEA YAYGA 
Sbjct: 287 QKMQGKILGQQVIRVSWGRPQTARQDVPGGWGQQVDQSQWSAYYGYGQPGYEA-YAYGAA 345

Query: 176 HDPSLXXXXXXXXXX---XXVEGAQDVSA----TMEQRDKLYDPLAMPDVDKLNAAYLSV 228
            DPS+               VEGAQDVSA    T+EQR++LYDPLAMPDVDKLNAAYLSV
Sbjct: 346 QDPSMYAYAGYASYAQYPQQVEGAQDVSAMSVPTLEQREELYDPLAMPDVDKLNAAYLSV 405

Query: 229 HGSAILGKSLWHSTYSSSLQQQA 251
           HG+AILG+SLWH T+SSSLQQQA
Sbjct: 406 HGNAILGRSLWHKTHSSSLQQQA 428


>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
           chr4:55111286-55115662 | 20130731
          Length = 411

 Score =  121 bits (304), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 94/186 (50%), Gaps = 29/186 (15%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPPDYD 60
           M EM GV CSTRP RI                               Y  P      + D
Sbjct: 226 MTEMQGVLCSTRPMRIGPASNKNLGTQTSKAS---------------YQNPQGGAQNEND 270

Query: 61  INNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQKMX 120
            NNTTIFVGNLD N+++E LKQ F Q+GE+V VKI +GK  GFVQF  R+SAEEA++ + 
Sbjct: 271 PNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLN 330

Query: 121 XXXXXXXXXXXSWGRTPTARQDMPGSWAPQMDPSQWNA----YYGYGQGYEASYAYG--A 174
                      SWGR+P  +Q        Q DP+QWN     + GY QGYE +YAY   A
Sbjct: 331 GTLLGGQNVRLSWGRSPANKQT-------QQDPNQWNGSSSYFGGYAQGYE-NYAYAPPA 382

Query: 175 THDPSL 180
             DP++
Sbjct: 383 GQDPNM 388


>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
           chr1:6171590-6176327 | 20130731
          Length = 425

 Score =  111 bits (278), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 88/183 (48%), Gaps = 28/183 (15%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPPDYD 60
           M +MNGVYCS+RP RI                                         + D
Sbjct: 249 MTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQS-----------------EAD 291

Query: 61  INNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQKMX 120
             NTTIFVG LD N+++E+LKQ F Q+GEI SVKI  GKG GFVQF  R +AEEA+QK+ 
Sbjct: 292 STNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGKGCGFVQFANRNNAEEALQKLN 351

Query: 121 XXXXXXXXXXXSWGRTPTARQ---DMPGSWAPQMDPSQWNAYYGYGQGYEASYAYGATHD 177
                      SWGR P  +Q   D+ GSWA    PS    Y GYG    + +     HD
Sbjct: 352 GTMIGKQTVRLSWGRNPAYKQFRLDV-GSWAGPYFPSP--IYDGYGYAMPSPH-----HD 403

Query: 178 PSL 180
           PS+
Sbjct: 404 PSM 406


>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
           chr4:33938062-33942519 | 20130731
          Length = 454

 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 70/137 (51%), Gaps = 2/137 (1%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPPDYD 60
           M EMNGVYCS+RP R+                                 A       + D
Sbjct: 273 MTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNG--AMAQGSQSEGD 330

Query: 61  INNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQKMX 120
            NNTTIFVG LD +IS+E+L+Q FLQFG+++SVKI  GKG GFVQ   R +AEEAIQ + 
Sbjct: 331 SNNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIPVGKGCGFVQLADRKNAEEAIQGLN 390

Query: 121 XXXXXXXXXXXSWGRTP 137
                      SWGR+P
Sbjct: 391 GTVIGKQTVRLSWGRSP 407


>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
           chr2:7987418-7992129 | 20130731
          Length = 401

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 78/160 (48%), Gaps = 33/160 (20%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPP--- 57
           M EM GV CSTRP RI                                T P  +  P   
Sbjct: 214 MTEMQGVLCSTRPMRIGPATNKNPAAT---------------------TQPKASYNPSGG 252

Query: 58  --DYDINNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEA 115
             + D NNTTIFVGNLD N++++ L+Q F Q+GE+V VKI +GK  GFVQF  R+ AEEA
Sbjct: 253 QSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPSGKRCGFVQFSDRSCAEEA 312

Query: 116 IQKMXXXXXXXXXXXXSWGRTPTARQDMPGSWAPQMDPSQ 155
           I+ +            SWGRTP+ +Q        Q DP+Q
Sbjct: 313 IRVLNGTLLGGQNVRLSWGRTPSNKQT-------QQDPTQ 345


>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
           chr3:46662442-46658399 | 20130731
          Length = 420

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 83/180 (46%), Gaps = 31/180 (17%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPP--D 58
           + EMNGV+CS+R  RI                                    N  P   D
Sbjct: 246 LNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQS-------------------NGTPSQSD 286

Query: 59  YDINNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQK 118
            D  NTTIFVG LD + + E+L+Q F Q+GEIVSVKI  GKG GFVQF  R +AEEA+QK
Sbjct: 287 TDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQK 346

Query: 119 MXXXXXXXXXXXXSWGRTPTARQDMPGSWAPQMDPSQWN--AYYGYGQGYEASYAYGATH 176
           +            SWGR P  +Q      +P      WN  AYYG G  Y+  Y Y   H
Sbjct: 347 LNGTTVGKQTVRLSWGRNPANKQFRSEFGSP------WNGPAYYG-GPAYDG-YGYAMPH 398


>Medtr7g053230.1 | hypothetical protein | LC |
           chr7:18719707-18719113 | 20130731
          Length = 65

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 52  VNTVPPDYDIN-NTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARA 110
           +NT PP+YD N N TIFVGNL  N+ EEELKQN   F EI+S KI   KG        RA
Sbjct: 1   MNTDPPEYDTNLNNTIFVGNLGFNVLEEELKQNLQLFREIISAKIHESKGVVLFNLTNRA 60

Query: 111 SAE 113
           S +
Sbjct: 61  SCQ 63


>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
           chr3:50426665-50437301 | 20130731
          Length = 424

 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 9/123 (7%)

Query: 53  NTVPPDYDINNTTIFVGNLDLNISEEELKQNF--LQFGEIVSVKIQAGKGYGFVQFGARA 110
           N   P+ + + TT++VGNL  ++++ EL   F  L  G +  V++Q+GKG+GFV++    
Sbjct: 240 NEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHE 299

Query: 111 SAEEAIQKMXXXXXXXXXXXXSWGRTP----TARQDMPGSWAPQMDPSQWNAYYGYGQGY 166
            A  AIQ              SWG  P    TA   +P    P   P Q     G  QGY
Sbjct: 300 EAAMAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLP---PPAAQPYQILPTAGMNQGY 356

Query: 167 EAS 169
            A+
Sbjct: 357 TAA 359


>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
           chr3:50427006-50436985 | 20130731
          Length = 440

 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 9/123 (7%)

Query: 53  NTVPPDYDINNTTIFVGNLDLNISEEELKQNF--LQFGEIVSVKIQAGKGYGFVQFGARA 110
           N   P+ + + TT++VGNL  ++++ EL   F  L  G +  V++Q+GKG+GFV++    
Sbjct: 256 NEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHE 315

Query: 111 SAEEAIQKMXXXXXXXXXXXXSWGRTP----TARQDMPGSWAPQMDPSQWNAYYGYGQGY 166
            A  AIQ              SWG  P    TA   +P    P   P Q     G  QGY
Sbjct: 316 EAAMAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLP---PPAAQPYQILPTAGMNQGY 372

Query: 167 EAS 169
            A+
Sbjct: 373 TAA 375


>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
           chr3:50426599-50437301 | 20130731
          Length = 440

 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 9/123 (7%)

Query: 53  NTVPPDYDINNTTIFVGNLDLNISEEELKQNF--LQFGEIVSVKIQAGKGYGFVQFGARA 110
           N   P+ + + TT++VGNL  ++++ EL   F  L  G +  V++Q+GKG+GFV++    
Sbjct: 256 NEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHE 315

Query: 111 SAEEAIQKMXXXXXXXXXXXXSWGRTP----TARQDMPGSWAPQMDPSQWNAYYGYGQGY 166
            A  AIQ              SWG  P    TA   +P    P   P Q     G  QGY
Sbjct: 316 EAAMAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLP---PPAAQPYQILPTAGMNQGY 372

Query: 167 EAS 169
            A+
Sbjct: 373 TAA 375


>Medtr3g079200.1 | zinc finger CCCH domain protein | HC |
           chr3:35625559-35621770 | 20130731
          Length = 492

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 55  VPPDYDINNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEE 114
           VP D  I   T++VG LD  ++E++L+ NF   GEI SVK+   +   FV +  R  AE+
Sbjct: 221 VPEDESIK--TLYVGGLDARVTEQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEK 278

Query: 115 AIQKMXXXXXXX-XXXXXSWGRTPTARQDMPG 145
           A +++              WGR  +A+ +  G
Sbjct: 279 AAEELSNKLVIKGLRLKLMWGRPQSAKPESDG 310


>Medtr1g019150.1 | polyadenylate-binding protein | HC |
           chr1:5708406-5713691 | 20130731
          Length = 647

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 65  TIFVGNLDLNISEEELKQNFLQFGEIVSVKIQA-----GKGYGFVQFGARASAEEAIQKM 119
            IF+ NLD  I  + L   F  FG+I+S KI        KGYGFVQF A  SA+ AI K+
Sbjct: 121 NIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKL 180


>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
           chr4:51822192-51817182 | 20130731
          Length = 404

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 57  PDYDINNTTIFVGNLDLNISEEELKQNF--LQFGEIVSVKIQAGKGYGFVQFGARASAEE 114
           P+ +   TT++VGNL   ++  +L  +F  L  G I  V++Q  KG+GFV++     A  
Sbjct: 245 PEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAAL 304

Query: 115 AIQKMXXXXXXXXXXXXSWGRTPTARQDMPGSWAPQMDP 153
           AIQ              SWG  PT     PG+ +  + P
Sbjct: 305 AIQMGNTRFLFGKPIKCSWGSKPTP----PGTASTPLPP 339


>Medtr4g085540.1 | polyadenylate-binding protein | HC |
           chr4:33416965-33423437 | 20130731
          Length = 654

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 65  TIFVGNLDLNISEEELKQNFLQFGEIVSVKIQA-----GKGYGFVQFGARASAEEAIQKM 119
            IF+ NLD  I  + L   F  FG I+S K+        KGYGFVQF    +A++AI+K+
Sbjct: 123 NIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKL 182