Miyakogusa Predicted Gene

Lj3g3v1684640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1684640.1 Non Chatacterized Hit- tr|Q10HZ8|Q10HZ8_ORYSJ
Putative RNA binding protein OS=Oryza sativa subsp.
ja,37.66,0.00001,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
description,Nucleotide-binding, alpha-beta plait,CUFF.43003.1
         (251 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   184   4e-47
AT5G19350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   181   3e-46
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R...   109   2e-24
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47...   104   6e-23
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45...   104   7e-23
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47...   100   1e-21
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ...    95   5e-20
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif...    89   2e-18
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47...    88   6e-18
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R...    78   6e-15
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro...    51   7e-07
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8...    49   2e-06
AT2G29580.1 | Symbols:  | CCCH-type zinc fingerfamily protein wi...    49   3e-06
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B...    48   5e-06
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B...    48   5e-06

>AT5G19350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:6518978-6521295 FORWARD LENGTH=421
          Length = 421

 Score =  184 bits (468), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/257 (47%), Positives = 143/257 (55%), Gaps = 22/257 (8%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPPDYD 60
           MAEMNG+YCSTRP RIS                              Y AP     P+ D
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKVTVPSAVAAPVQAYVAP-----PESD 229

Query: 61  INNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQKMX 120
           +  TTI V NLD N++EEELK+ F Q GE++ VKI A KGYG+VQF  R SAEEA+Q+M 
Sbjct: 230 VTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQ 289

Query: 121 XXXXXXXXXXXSWGRTPTARQDMPGSWAPQMDPSQWNAYYGYGQGYEASYAYGATHDPSL 180
                      SW + P   QD    W  Q DP+QWN YYGYGQGY+A YAYGAT DPS+
Sbjct: 290 GQVIGQQAVRISWSKNPG--QD---GWVTQADPNQWNGYYGYGQGYDA-YAYGATQDPSV 343

Query: 181 XXXXXXX--XXXXXVEGAQDVS-------ATMEQRDKLYDPLAMPDVDKLNAAYLSVHGS 231
                          EG QD+S       A  EQ  +LYDPLA PDVDKLNAAYLSVH S
Sbjct: 344 YAYGGYGYPQYPQQGEGTQDISNSAAGGVAGAEQ--ELYDPLATPDVDKLNAAYLSVHAS 401

Query: 232 AILGKSLWHSTYSSSLQ 248
           AILG+ +W  T S + Q
Sbjct: 402 AILGRPMWQRTSSLTSQ 418


>AT5G19350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:6518978-6521295 FORWARD LENGTH=425
          Length = 425

 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/259 (47%), Positives = 144/259 (55%), Gaps = 22/259 (8%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVN--TVPPD 58
           MAEMNG+YCSTRP RIS                                APV     PP+
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAV---AAPVQAYVAPPE 231

Query: 59  YDINNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQK 118
            D+  TTI V NLD N++EEELK+ F Q GE++ VKI A KGYG+VQF  R SAEEA+Q+
Sbjct: 232 SDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQR 291

Query: 119 MXXXXXXXXXXXXSWGRTPTARQDMPGSWAPQMDPSQWNAYYGYGQGYEASYAYGATHDP 178
           M            SW + P   QD    W  Q DP+QWN YYGYGQGY+A YAYGAT DP
Sbjct: 292 MQGQVIGQQAVRISWSKNPG--QD---GWVTQADPNQWNGYYGYGQGYDA-YAYGATQDP 345

Query: 179 SLXXXXXXX--XXXXXVEGAQDVS-------ATMEQRDKLYDPLAMPDVDKLNAAYLSVH 229
           S+               EG QD+S       A  EQ  +LYDPLA PDVDKLNAAYLSVH
Sbjct: 346 SVYAYGGYGYPQYPQQGEGTQDISNSAAGGVAGAEQ--ELYDPLATPDVDKLNAAYLSVH 403

Query: 230 GSAILGKSLWHSTYSSSLQ 248
            SAILG+ +W  T S + Q
Sbjct: 404 ASAILGRPMWQRTSSLTSQ 422


>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
           motifs) family protein | chr1:3914895-3917941 FORWARD
           LENGTH=405
          Length = 405

 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 88/179 (49%), Gaps = 26/179 (14%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPPDYD 60
           M EMNGV CSTRP RI                               Y +    V  D D
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVTGQRDS----------------YQSSAAGVTTDND 257

Query: 61  INNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQKMX 120
            NNTT+FVG LD +++++ LK  F Q+GEIV VKI AGK  GFVQF  ++ AEEA++ + 
Sbjct: 258 PNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLN 317

Query: 121 XXXXXXXXXXXSWGRTPTARQDMPGSWAPQMDPSQWNAYYGYGQGYEASYAYGATHDPS 179
                      SWGR+P+ +Q          DPSQ+  Y GYGQG E  Y Y    DP+
Sbjct: 318 GVQLGGTTVRLSWGRSPSNKQ--------SGDPSQF-YYGGYGQGQE-QYGYTMPQDPN 366


>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
           chr1:18357236-18360150 REVERSE LENGTH=445
          Length = 445

 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 78/171 (45%), Gaps = 15/171 (8%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPPDYD 60
           M EMNG +CS+R  R+                                    N    D +
Sbjct: 272 MTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGG--------NGSMSDGE 323

Query: 61  INNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQKMX 120
            NN+TIFVG LD +++EE+L Q F  FGE+VSVKI  GKG GFVQF  R SAEEAI  + 
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLN 383

Query: 121 XXXXXXXXXXXSWGRTPTARQDMPGSWAPQMDPSQWNAYYGYGQGYEASYA 171
                      SWGR+P  +      W      +QWN  Y  GQGY   YA
Sbjct: 384 GTVIGKNTVRLSWGRSPNKQ------WRSDSG-NQWNGGYSRGQGYNNGYA 427


>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
           chr5:22295412-22298126 FORWARD LENGTH=387
          Length = 387

 Score =  104 bits (259), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 83/184 (45%), Gaps = 31/184 (16%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPPDYD 60
           M EMNG YCSTRP RI                               Y         D D
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAM----------------YQNTQGANAGDND 256

Query: 61  INNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQKMX 120
            NNTTIFVG LD N++++ELK  F QFGE++ VKI  GK  GFVQ+  +ASAE A+  + 
Sbjct: 257 PNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLN 316

Query: 121 XXXXXXXXXXXSWGRTPTARQDMPGSWAPQMDPSQWN--AYYGYGQGYEASYAYGA---T 175
                      SWGR+P            Q D +QWN   YYGY    +  Y Y A   T
Sbjct: 317 GTQLGGQSIRLSWGRSPNK----------QSDQAQWNGGGYYGYPPQPQGGYGYAAQPPT 366

Query: 176 HDPS 179
            DP+
Sbjct: 367 QDPN 370


>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
           chr1:17424801-17427182 FORWARD LENGTH=432
          Length = 432

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPPDYD 60
           M EMNGV CS+R  RI                               Y        P+ D
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGG---------------YMPNGTLTRPEGD 300

Query: 61  INNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQKMX 120
           I NTTIFVG LD ++++E+LKQ F +FGEIVSVKI  GKG GFVQF  R +AEEA++K+ 
Sbjct: 301 IMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLN 360

Query: 121 XXXXXXXXXXXSWGRTPTARQDMPGSWAPQMDPSQWNAYY-GYG 163
                      SWGR P  +Q         +DP     +Y GYG
Sbjct: 361 GTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYG 404


>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
           47C' | chr1:17432682-17434805 FORWARD LENGTH=434
          Length = 434

 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 77/164 (46%), Gaps = 16/164 (9%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPPDYD 60
           M EMNGV CS+R  RI                               Y         + D
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGG---------------YMPSGAFTRSEGD 302

Query: 61  INNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQKMX 120
             NTTIFVG LD ++++E+LKQ F +FGEIVSVKI  GKG GFVQF  R +AEEA++K+ 
Sbjct: 303 TINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLN 362

Query: 121 XXXXXXXXXXXSWGRTPTARQDMPGSWAPQMDPSQWNAYY-GYG 163
                      SWGR P  +Q         +DP     +Y GYG
Sbjct: 363 GTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYG 406


>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
           family protein | chr4:13554983-13557763 REVERSE
           LENGTH=415
          Length = 415

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 70/154 (45%), Gaps = 37/154 (24%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPPDY- 59
           M EMNG YCS+RP R                                   P+   P  Y 
Sbjct: 232 MTEMNGQYCSSRPMRTGPAANKK---------------------------PLTMQPASYQ 264

Query: 60  ---------DINNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARA 110
                    D  NTTIFVG +D +++E++LK  F QFGE+V VKI AGK  GFVQ+  RA
Sbjct: 265 NTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRA 324

Query: 111 SAEEAIQKMXXXXXXXXXXXXSWGRTPTARQDMP 144
            AE+A+  +            SWGR+P+ +Q  P
Sbjct: 325 CAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQP 358


>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
           chr3:6611398-6613823 REVERSE LENGTH=435
          Length = 435

 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 65/140 (46%), Gaps = 3/140 (2%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPPDYD 60
           + EMNG YCS R  R+                                     +   D +
Sbjct: 261 LTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQS---DGE 317

Query: 61  INNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQKMX 120
             N TIFVG +D ++ +E+L+Q F QFGE+VSVKI  GKG GFVQF  R SAE+AI+ + 
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLN 377

Query: 121 XXXXXXXXXXXSWGRTPTAR 140
                      SWGR+P  +
Sbjct: 378 GTVIGKNTVRLSWGRSPNKQ 397


>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
           motifs) family protein | chr1:3914895-3917301 FORWARD
           LENGTH=306
          Length = 306

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 54/109 (49%), Gaps = 16/109 (14%)

Query: 1   MAEMNGVYCSTRPTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTAPVNTVPPDYD 60
           M EMNGV CSTRP RI                               Y +    V  D D
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVTGQRDS----------------YQSSAAGVTTDND 257

Query: 61  INNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGAR 109
            NNTT+FVG LD +++++ LK  F Q+GEIV VKI AGK  GFVQF  +
Sbjct: 258 PNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK 306


>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
           protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
          Length = 629

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 66  IFVGNLDLNISEEELKQNFLQFGEIVSVKIQA-----GKGYGFVQFGARASAEEAIQKM 119
           IF+ NLD +I  + L   F  FG IVS K+        KGYGFVQ+    SA++AI+K+
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184


>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
           chr1:8055599-8058799 FORWARD LENGTH=660
          Length = 660

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 66  IFVGNLDLNISEEELKQNFLQFGEIVSVKIQA-----GKGYGFVQFGARASAEEAIQKM 119
           IF+ NLD +I  + L + F  FG I+S K+        KGYGFVQF    SA+ AI K+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196


>AT2G29580.1 | Symbols:  | CCCH-type zinc fingerfamily protein with
           RNA-binding domain | chr2:12652011-12654158 FORWARD
           LENGTH=483
          Length = 483

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 65  TIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQKMXXXXX 124
           T++VG L+  + E++++  F   GEI S++I A K   FV +  R  AE+A +++     
Sbjct: 229 TLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLV 288

Query: 125 XX-XXXXXSWGRTPTARQDMPGS 146
                   +WGR    + D  GS
Sbjct: 289 VNGQRLKLTWGRPQVPKPDQDGS 311


>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
           chr1:5951842-5954825 REVERSE LENGTH=416
          Length = 416

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 52  VNTVPPDYDINNTTIFVGNLDLNISEEELKQNF--LQFGEIVSVKIQAGKGYGFVQFGAR 109
            N   P+ +   TT++VGNL   +S+ +L ++F  L  G I  V++Q  KG+GFV++   
Sbjct: 245 TNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH 304

Query: 110 ASAEEAIQKMXXXX-XXXXXXXXSWGRTPT 138
             A  AIQ               SWG  PT
Sbjct: 305 VEAALAIQMGNTHSYLSGRQMKCSWGSKPT 334


>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
           chr1:5951842-5954825 REVERSE LENGTH=419
          Length = 419

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 52  VNTVPPDYDINNTTIFVGNLDLNISEEELKQNF--LQFGEIVSVKIQAGKGYGFVQFGAR 109
            N   P+ +   TT++VGNL   +S+ +L ++F  L  G I  V++Q  KG+GFV++   
Sbjct: 248 TNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH 307

Query: 110 ASAEEAIQKMXXXX-XXXXXXXXSWGRTPT 138
             A  AIQ               SWG  PT
Sbjct: 308 VEAALAIQMGNTHSYLSGRQMKCSWGSKPT 337