Miyakogusa Predicted Gene
- Lj3g3v1684640.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1684640.1 Non Chatacterized Hit- tr|Q10HZ8|Q10HZ8_ORYSJ
Putative RNA binding protein OS=Oryza sativa subsp.
ja,37.66,0.00001,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
description,Nucleotide-binding, alpha-beta plait,CUFF.43003.1
(756 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74380 similar to UniRef100_A7NZS1 Cluster: Chromosome... 1247 0.0
gnl|LJGI|TC64103 similar to UniRef100_A7NZS1 Cluster: Chromosome... 111 6e-24
gnl|LJGI|TC69593 similar to UniRef100_A7NZS1 Cluster: Chromosome... 76 4e-13
>gnl|LJGI|TC74380 similar to UniRef100_A7NZS1 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (38%)
Length = 874
Score = 1247 bits (629), Expect = 0.0
Identities = 641/645 (99%)
Strand = Plus / Plus
Query: 112 gctccgaaaacaatatatccaatccctgcgtacactgcccctgtgaacacagttccacca 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctccgaaaacaatatatccaatccctgcgtacactgcccctgtgaacacagttccacca 60
Query: 172 gattatgatataaataatactactatttttgttggtaatttggatcttaatatctcagag 231
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 61 gattatgatataaataatactactatttttgttgataatttggatcttaatatctcagag 120
Query: 232 gaggagctgaagcaaaactttctgcaattcggagagatagtctctgtcaaaattcaagct 291
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 121 gaggagctgaagcaaaactttctgcaattcggagagatagtctctatcaaaattcaagct 180
Query: 292 ggaaaaggatatggttttgttcaatttggggctagagcatctgctgaagaagccattcag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggaaaaggatatggttttgttcaatttggggctagagcatctgctgaagaagccattcag 240
Query: 352 aagatgcagggaaggataataggacaacaagtgatccgaatttcatggggcaggacccca 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagatgcagggaaggataataggacaacaagtgatccgaatttcatggggcaggacccca 300
Query: 412 acagctagacaggacatgcctggtagctgggcaccacagatggatccaagtcaatggaat 471
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 301 acagctagacaggacatgcctagtagctgggcaccatagatggatccaagtcaatggaat 360
Query: 472 gcctactatggttatggacagggttatgaagcttcctatgcttatggggctactcatgat 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcctactatggttatggacagggttatgaagcttcctatgcttatggggctactcatgat 420
Query: 532 ccttcattgtatgcatatgctggctatgcacaatacccccaacaagttgaaggtgctcaa 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccttcattgtatgcatatgctggctatgcacaatacccccaacaagttgaaggtgctcaa 480
Query: 592 gacgtatcggctaccatggaacaaagggacaagttgtatgatcccctggcaatgcctgat 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gacgtatcggctaccatggaacaaagggacaagttgtatgatcccctggcaatgcctgat 540
Query: 652 gttgacaagttaaatgctgcatatctttcagtacacggaagtgccattttagggaagtcc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gttgacaagttaaatgctgcatatctttcagtacacggaagtgccattttagggaagtcc 600
Query: 712 ctctggcacagtacctattcctcatccttacagcagcaagcttag 756
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctctggcacagtacctattcctcatccttacagcagcaagcttag 645
>gnl|LJGI|TC64103 similar to UniRef100_A7NZS1 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 694
Score = 111 bits (56), Expect = 6e-24
Identities = 226/281 (80%), Gaps = 20/281 (7%)
Strand = Plus / Plus
Query: 452 tggatccaagtcaatggaatgcctactatggttatggacagggttatgaagcttcctatg 511
||||||||| |||||||||||||||||||| |||||||| ||||||||||| | |||
Sbjct: 56 tggatccaaatcaatggaatgcctactatgcatatggacaaggttatgaagcat---atg 112
Query: 512 cttatggggctactcatgatccttcattgtatgcatatg---------ctggctatgcac 562
||||||| |||||||| |||||||| | |||||||||| |||| | |||||
Sbjct: 113 cttatggagctactcaagatccttcctcatatgcatatggtgcatatgctggttttgcac 172
Query: 563 aatacccccaacaagttgaaggtgctcaagacgtatcggcta---ccatgga-acaaagg 618
|||| || ||||| |||||||||||||||||| | || ||| | ||| ||| |||
Sbjct: 173 aatatcctcaacaggttgaaggtgctcaagacatgtcagctgtgtctatgcctacagagg 232
Query: 619 gacaagttgtatgatcccctggcaatgcctgatgttgacaagttaaatgctgcatatctt 678
|| ||||||||||| |||||||||||||||| || ||||||||| |||||||| ||
Sbjct: 233 ----agctgtatgatcccatggcaatgcctgatgtcgataagttaaatactgcatatgtt 288
Query: 679 tcagtacacggaagtgccattttagggaagtccctctggca 719
||| |||| ||||| ||||||||||| ||||||||||||
Sbjct: 289 tcaatacatggaagcgccattttaggacggtccctctggca 329
>gnl|LJGI|TC69593 similar to UniRef100_A7NZS1 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (48%)
Length = 772
Score = 75.8 bits (38), Expect = 4e-13
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 162 agttccaccagattatgatataaataatactactatttttgttggtaatttggatcttaa 221
|||| ||||||| ||||| | |||||||||||| ||| |||||||||||||||||||||
Sbjct: 657 agttgcaccagagaatgatgtgaataatactactgtttgtgttggtaatttggatcttaa 716
Query: 222 tatctcagaggaggagctgaagcaaa 247
| | | ||||||||||| |||||||
Sbjct: 717 tgtaacggaggaggagcttaagcaaa 742