Miyakogusa Predicted Gene

Lj3g3v1680410.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1680410.1 CUFF.42992.1
         (389 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g097740.1 | transcription factor IIA, alpha/beta subunit |...   497   e-141
Medtr2g097740.2 | transcription factor IIA, alpha/beta subunit |...   391   e-109

>Medtr2g097740.1 | transcription factor IIA, alpha/beta subunit | HC
           | chr2:41766158-41760609 | 20130731
          Length = 388

 Score =  497 bits (1280), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/390 (68%), Positives = 292/390 (74%), Gaps = 8/390 (2%)

Query: 5   AASSTSQVYIDVIEDVMVKVRDEFVNNGG-PGEEVLKELQAMWESKMIQAGVVLGPIERS 63
           AAS+TSQVYIDVIEDVMVKVRDEFVN G  PG+EVL+ELQA+WESK IQAG VLGPIER+
Sbjct: 2   AASTTSQVYIDVIEDVMVKVRDEFVNTGASPGDEVLRELQAIWESKCIQAGAVLGPIERN 61

Query: 64  IAA-KPMPGGPITPVHDLNVXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXXXVDN-SYN 121
               +PMPGGPITPVHDLNV            A+                    +  +YN
Sbjct: 62  TGVNRPMPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGPGETPNYN 121

Query: 122 IPTGPSDYSSSGNDAGGNIDAKGGRPGPYMQPPSPWMN--PRPSLDVNVAYVEGRDEPDR 179
           IPTGPSDYSS GNDAGGN D KGGR   +M PPSPWMN   RP LDVNVAYVEGRDE DR
Sbjct: 122 IPTGPSDYSS-GNDAGGNADVKGGRQA-FMPPPSPWMNMNQRPPLDVNVAYVEGRDEADR 179

Query: 180 GTSNQPLTQDFLAISTGKRKRNDLPSQYNAGGYIPQQDGAGDVSSRDFEIEVHGGGISIN 239
           G SNQP+TQDF  ++ GKRKRNDLP  Y+AGGYIPQQDGAGD  S DFEIEV GG IS N
Sbjct: 180 GASNQPMTQDFFTMTGGKRKRNDLPPPYDAGGYIPQQDGAGDAVSGDFEIEVCGGSISFN 239

Query: 240 SNHTSFKGKMLADLERQASRIPQLDGPIPYDDDMLSTPNIYNYGGVYTEDYNVANTPAPP 299
           S HT+ KGKM ADLER ASRIPQLDGPIPY+DD+LSTPNIYNYGGV+ EDYN+ANTPAPP
Sbjct: 240 SQHTNSKGKMPADLERLASRIPQLDGPIPYEDDVLSTPNIYNYGGVFNEDYNIANTPAPP 299

Query: 300 EVPASTPALVAQNEVXXXXXXXXXXXXXXXXXXXXXXXQGEDQNTHHLVLAQFDKVTRTK 359
           EVPASTPALVAQNE                        + +DQ+T+HLVLAQFDKVTRTK
Sbjct: 300 EVPASTPALVAQNEAVNEDEDDEPLNEDDDDDLDDLDQE-DDQDTNHLVLAQFDKVTRTK 358

Query: 360 SRWKCTLKDGIMHINNKDVLFNKATGEFDF 389
           SRWKCTLKDGIMHIN KD+LFNKATGEFDF
Sbjct: 359 SRWKCTLKDGIMHINKKDILFNKATGEFDF 388


>Medtr2g097740.2 | transcription factor IIA, alpha/beta subunit | HC
           | chr2:41766143-41760609 | 20130731
          Length = 304

 Score =  391 bits (1004), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/300 (69%), Positives = 228/300 (76%), Gaps = 7/300 (2%)

Query: 5   AASSTSQVYIDVIEDVMVKVRDEFVNNGG-PGEEVLKELQAMWESKMIQAGVVLGPIERS 63
           AAS+TSQVYIDVIEDVMVKVRDEFVN G  PG+EVL+ELQA+WESK IQAG VLGPIER+
Sbjct: 2   AASTTSQVYIDVIEDVMVKVRDEFVNTGASPGDEVLRELQAIWESKCIQAGAVLGPIERN 61

Query: 64  IAA-KPMPGGPITPVHDLNVXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXXXVDN-SYN 121
               +PMPGGPITPVHDLNV            A+                    +  +YN
Sbjct: 62  TGVNRPMPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGPGETPNYN 121

Query: 122 IPTGPSDYSSSGNDAGGNIDAKGGRPGPYMQPPSPWMN--PRPSLDVNVAYVEGRDEPDR 179
           IPTGPSDYSS GNDAGGN D KGGR   +M PPSPWMN   RP LDVNVAYVEGRDE DR
Sbjct: 122 IPTGPSDYSS-GNDAGGNADVKGGRQA-FMPPPSPWMNMNQRPPLDVNVAYVEGRDEADR 179

Query: 180 GTSNQPLTQDFLAISTGKRKRNDLPSQYNAGGYIPQQDGAGDVSSRDFEIEVHGGGISIN 239
           G SNQP+TQDF  ++ GKRKRNDLP  Y+AGGYIPQQDGAGD  S DFEIEV GG IS N
Sbjct: 180 GASNQPMTQDFFTMTGGKRKRNDLPPPYDAGGYIPQQDGAGDAVSGDFEIEVCGGSISFN 239

Query: 240 SNHTSFKGKMLADLERQASRIPQLDGPIPYDDDMLSTPNIYNYGGVYTEDYNVANTPAPP 299
           S HT+ KGKM ADLER ASRIPQLDGPIPY+DD+LSTPNIYNYGGV+ EDYN+ANTPAPP
Sbjct: 240 SQHTNSKGKMPADLERLASRIPQLDGPIPYEDDVLSTPNIYNYGGVFNEDYNIANTPAPP 299