Miyakogusa Predicted Gene

Lj3g3v1680410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1680410.1 CUFF.42992.1
         (389 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07480.2 | Symbols:  | Transcription factor IIA, alpha/beta s...   342   2e-94
AT1G07480.1 | Symbols:  | Transcription factor IIA, alpha/beta s...   342   2e-94
AT1G07470.1 | Symbols:  | Transcription factor IIA, alpha/beta s...   340   9e-94
AT5G59230.1 | Symbols:  | transcription factor-related | chr5:23...    70   3e-12

>AT1G07480.2 | Symbols:  | Transcription factor IIA, alpha/beta
           subunit | chr1:2296706-2299215 REVERSE LENGTH=375
          Length = 375

 Score =  342 bits (878), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 211/391 (53%), Positives = 247/391 (63%), Gaps = 22/391 (5%)

Query: 4   AAASSTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMIQAGVVLGPIERS 63
              ++TS VYI VIEDV+ KVR+EF+NNGGPGE VL ELQ +WE+KM+QAGV+ GPIERS
Sbjct: 2   GTTTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERS 61

Query: 64  IAAKPMPGGPITPVHDLNVXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXXXVDNS--YN 121
            A KP PGGP+T  HDLNV            A+                    DNS  YN
Sbjct: 62  SAQKPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYN 119

Query: 122 IPTGPSDYSSSGNDAGGNIDAKGGRPGPYMQPPSPWMNPRPSLDVNVAYVEGRDEPDRGT 181
           IPTG SDY + G + G NID K  RP PYM PPSPW NPR  LDVNVAYV+GRDEP+RG 
Sbjct: 120 IPTGSSDYPTPGTENGVNIDVK-ARPSPYMPPPSPWTNPR--LDVNVAYVDGRDEPERGN 176

Query: 182 SNQPLTQDFLAISTGKRKRNDLPSQYNAGGYIPQQDGAGD-VSSRDFEIEVHGGGISINS 240
           SNQ  TQD    S+GKRKR+D    Y  GG IPQQDGAGD +   +FE +       I S
Sbjct: 177 SNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECD----AFRITS 232

Query: 241 NHTSFKGKMLADLERQASRIPQLDGPI--PYDDDMLSTPNIYNYGGVYTEDYNVANTPAP 298
                  K+  D    +S+IPQ+DGP+  PY D+MLSTPNIY+Y G  +E++N A TPAP
Sbjct: 233 IGDR---KVPRDFFSSSSKIPQVDGPMPDPY-DEMLSTPNIYSYQGP-SEEFNEARTPAP 287

Query: 299 PEVPASTPALVAQNEVXXXXXXXXXXXXXXXXXXXXXXXQGEDQNTHHLVLAQFDKVTRT 358
            E+  STP  V QN++                        GED NT HLVLAQFDKVTRT
Sbjct: 288 NEIQTSTPVAV-QNDI--IEDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRT 344

Query: 359 KSRWKCTLKDGIMHINNKDVLFNKATGEFDF 389
           KSRWKC+LKDGIMHIN+KD+LFNKA GEFDF
Sbjct: 345 KSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375


>AT1G07480.1 | Symbols:  | Transcription factor IIA, alpha/beta
           subunit | chr1:2296706-2299215 REVERSE LENGTH=375
          Length = 375

 Score =  342 bits (878), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 211/391 (53%), Positives = 247/391 (63%), Gaps = 22/391 (5%)

Query: 4   AAASSTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMIQAGVVLGPIERS 63
              ++TS VYI VIEDV+ KVR+EF+NNGGPGE VL ELQ +WE+KM+QAGV+ GPIERS
Sbjct: 2   GTTTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERS 61

Query: 64  IAAKPMPGGPITPVHDLNVXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXXXVDNS--YN 121
            A KP PGGP+T  HDLNV            A+                    DNS  YN
Sbjct: 62  SAQKPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYN 119

Query: 122 IPTGPSDYSSSGNDAGGNIDAKGGRPGPYMQPPSPWMNPRPSLDVNVAYVEGRDEPDRGT 181
           IPTG SDY + G + G NID K  RP PYM PPSPW NPR  LDVNVAYV+GRDEP+RG 
Sbjct: 120 IPTGSSDYPTPGTENGVNIDVK-ARPSPYMPPPSPWTNPR--LDVNVAYVDGRDEPERGN 176

Query: 182 SNQPLTQDFLAISTGKRKRNDLPSQYNAGGYIPQQDGAGD-VSSRDFEIEVHGGGISINS 240
           SNQ  TQD    S+GKRKR+D    Y  GG IPQQDGAGD +   +FE +       I S
Sbjct: 177 SNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECD----AFRITS 232

Query: 241 NHTSFKGKMLADLERQASRIPQLDGPI--PYDDDMLSTPNIYNYGGVYTEDYNVANTPAP 298
                  K+  D    +S+IPQ+DGP+  PY D+MLSTPNIY+Y G  +E++N A TPAP
Sbjct: 233 IGDR---KVPRDFFSSSSKIPQVDGPMPDPY-DEMLSTPNIYSYQGP-SEEFNEARTPAP 287

Query: 299 PEVPASTPALVAQNEVXXXXXXXXXXXXXXXXXXXXXXXQGEDQNTHHLVLAQFDKVTRT 358
            E+  STP  V QN++                        GED NT HLVLAQFDKVTRT
Sbjct: 288 NEIQTSTPVAV-QNDI--IEDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRT 344

Query: 359 KSRWKCTLKDGIMHINNKDVLFNKATGEFDF 389
           KSRWKC+LKDGIMHIN+KD+LFNKA GEFDF
Sbjct: 345 KSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375


>AT1G07470.1 | Symbols:  | Transcription factor IIA, alpha/beta
           subunit | chr1:2291723-2294350 FORWARD LENGTH=375
          Length = 375

 Score =  340 bits (872), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 209/392 (53%), Positives = 246/392 (62%), Gaps = 26/392 (6%)

Query: 5   AASSTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMIQAGVVLGPIERSI 64
             ++TS VYI VIEDV+ KVR+EF+NNGGPGE VL ELQ +WE+KM+QAGV+ GPIERS 
Sbjct: 3   TTTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSS 62

Query: 65  AAKPMPGGPITPVHDLNVXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXXXVDNS--YNI 122
           A KP PGGP+T  HDLNV            A+                    DNS  YNI
Sbjct: 63  AQKPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNI 120

Query: 123 PTGPSDYSSSGNDAGGNIDAKGGRPGPYMQPPSPWMNPRPSLDVNVAYVEGRDEPDRGTS 182
           PTG SDY + G + G NID K  RP PYM PPSPW NPR  LDVNVAYV+GRDEP+RG S
Sbjct: 121 PTGSSDYPTPGTENGVNIDVK-ARPSPYMPPPSPWTNPR--LDVNVAYVDGRDEPERGNS 177

Query: 183 NQPLTQDFLAISTGKRKRNDLPSQYNAGGYIPQQDGAGD-VSSRDFEIEVHGGGISINSN 241
           NQ  TQD    S+GKRKR+D  + Y  GG IPQQDGA D +   +FE             
Sbjct: 178 NQQFTQDLFVPSSGKRKRDDSSAHYQNGGSIPQQDGASDAIPEANFECAAL--------- 228

Query: 242 HTSFKG--KMLADLERQASRIPQLDGPI--PYDDDMLSTPNIYNYGGVYTEDYNVANTPA 297
             ++ G  K+  DL   +S+IPQ+DGP+  PY D+MLSTPNIY+Y G   E++N A TPA
Sbjct: 229 RITYVGDRKIPRDLIGSSSKIPQVDGPMPDPY-DEMLSTPNIYSYQGP-NEEFNEARTPA 286

Query: 298 PPEVPASTPALVAQNEVXXXXXXXXXXXXXXXXXXXXXXXQGEDQNTHHLVLAQFDKVTR 357
           P E+  STP  V  + +                        GED NT HLVLAQFDKVTR
Sbjct: 287 PNEIQTSTPVAVPNDII---EDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTR 343

Query: 358 TKSRWKCTLKDGIMHINNKDVLFNKATGEFDF 389
           TKSRWKC+LKDGIMHIN+KD+LFNKATGEFDF
Sbjct: 344 TKSRWKCSLKDGIMHINDKDILFNKATGEFDF 375


>AT5G59230.1 | Symbols:  | transcription factor-related |
           chr5:23901555-23902379 FORWARD LENGTH=186
          Length = 186

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 37/47 (78%)

Query: 343 NTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDVLFNKATGEFDF 389
           N  HLV+ QFDKV R+K++W+C    G+M IN K+VLF++ATG+F+F
Sbjct: 140 NIQHLVMCQFDKVKRSKNKWECKFNAGVMQINGKNVLFSQATGDFNF 186



 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%)

Query: 5  AASSTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMIQAGVVLGPIERSI 64
          + S TS  Y  VI+DV+ K R + V NG   E VL ++Q+MW++KMIQAG + G IE S 
Sbjct: 4  STSDTSSSYNYVIDDVINKSRCDLVYNGELDESVLSQIQSMWKTKMIQAGAMSGTIETSS 63

Query: 65 AAKP 68
          A+ P
Sbjct: 64 ASIP 67