Miyakogusa Predicted Gene
- Lj3g3v1114710.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v1114710.1 Non Chatacterized Hit- tr|I1M4F6|I1M4F6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.51932 PE,58.09,0,PHD
zinc finger,Zinc finger, PHD-type; HIGH MOBILITY GROUP PROTEIN 2-LIKE
1 (PROTEIN HMGBCG) SOURCE,CUFF.42236.1
(2901 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV780498 117 4e-25
gnl|LJGI|TC68085 weakly similar to UniRef100_A7PQN7 Cluster: Chr... 78 3e-13
gnl|LJGI|GO038673 weakly similar to UniRef100_A7QJA9 Cluster: Ch... 62 2e-08
gnl|LJGI|TC66236 weakly similar to UniRef100_A7QJA9 Cluster: Chr... 62 2e-08
gnl|LJGI|TC75903 weakly similar to UniRef100_A7QJA9 Cluster: Chr... 56 1e-06
>gnl|LJGI|AV780498
Length = 189
Score = 117 bits (59), Expect = 4e-25
Identities = 80/86 (93%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 atggcgaaaggtaaggattctgatgagtttgtgttgctttcgaagatccgtac--ggggg 58
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||| | |||
Sbjct: 104 atggcgaaaggtaaggatactgatgagtgtgtgtagctttcgaagatccgtactggtggg 163
Query: 59 tgaagagggagtttgcattcgccatg 84
||||||||||||||||||||||||||
Sbjct: 164 tgaagagggagtttgcattcgccatg 189
>gnl|LJGI|TC68085 weakly similar to UniRef100_A7PQN7 Cluster: Chromosome chr6
scaffold_25, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr6 scaffold_25, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (14%)
Length = 594
Score = 77.8 bits (39), Expect = 3e-13
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 2123 tctttggtcctcggactgtaattatttgtgatcagtgtgaaagggaatatcatgttgggt 2182
|||||||||||||||| ||||| ||||||||||||||||| | |||||| ||||| | ||
Sbjct: 398 tctttggtcctcggacagtaatgatttgtgatcagtgtgagaaggaataccatgtcgagt 457
Query: 2183 gtttgaagcaacataacatgcag 2205
| |||||| | ||||||| ||||
Sbjct: 458 gcttgaaggatcataacaagcag 480
>gnl|LJGI|GO038673 weakly similar to UniRef100_A7QJA9 Cluster: Chromosome chr8
scaffold_106, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_106, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (31%)
Length = 868
Score = 61.9 bits (31), Expect = 2e-08
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 2742 ccttgtcctgccagcggctgaggaagctgaatcaatatggacgggtaaatttgggttta 2800
|||||| |||||||| || || ||||| |||||||||||||| | ||||||||||||||
Sbjct: 323 ccttgtactgccagctgcagaagaagcagaatcaatatggaccgataaatttgggttta 265
>gnl|LJGI|TC66236 weakly similar to UniRef100_A7QJA9 Cluster: Chromosome chr8
scaffold_106, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_106, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (43%)
Length = 859
Score = 61.9 bits (31), Expect = 2e-08
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 2742 ccttgtcctgccagcggctgaggaagctgaatcaatatggacgggtaaatttgggttta 2800
|||||| |||||||| || || ||||| |||||||||||||| | ||||||||||||||
Sbjct: 443 ccttgtactgccagctgcagaagaagcagaatcaatatggaccgataaatttgggttta 501
>gnl|LJGI|TC75903 weakly similar to UniRef100_A7QJA9 Cluster: Chromosome chr8
scaffold_106, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_106, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (12%)
Length = 472
Score = 56.0 bits (28), Expect = 1e-06
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 2734 gtgaaaaaccttgtcctgccagcggctgaggaagctgaatcaatatggacgggtaaattt 2793
|||||||||||||| || ||||| ||||| ||||| ||||| ||||||| |||||||
Sbjct: 13 gtgaaaaaccttgtgctaccagctgctgaagaagcagaatctatatggattcataaattt 72
Query: 2794 gggtttaccaag 2805
||||||| ||||
Sbjct: 73 gggtttagcaag 84