Miyakogusa Predicted Gene

Lj3g3v1074930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1074930.1 tr|Q8GUQ0|Q8GUQ0_BRAOE DsRNA-binding protein
OS=Brassica oleracea var. acephala GN=lh PE=2
SV=1,39.38,2e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Double-stranded RNA binding motif,Double-stranded R,CUFF.42131.1
         (475 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:121...   408   e-114
AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 | chr5:164...   271   7e-73
AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993...   265   4e-71
AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:993...   265   4e-71
AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protei...   127   1e-29
AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protei...   127   1e-29
AT3G62800.3 | Symbols:  | double-stranded-RNA-binding protein 4 ...   127   1e-29
AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like su...    92   6e-19

>AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 |
           chr2:12134098-12135915 REVERSE LENGTH=434
          Length = 434

 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/333 (65%), Positives = 242/333 (72%), Gaps = 32/333 (9%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCNTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESP YC+TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AEVVLSSLSHRGPSRSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEV L++LS+RGPS SLAA+ILDETGVYKNLLQEIAQRVGAPLP+YTTFRSGLGH PVFT
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNSAMAAWSSLKQLAKETASSSSEPENNDELEQITIAR 180
           G VELAGITFTG+PAKNKKQAEKN+AMAAWSSLKQLAKET+SS  EPEN DELEQ+ IAR
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query: 181 ALLNYRLKEKMAM-SDPNAPIPFQKKFXXXXXXXXXXXXXXXXXXXXLPLICQKAAPRSR 239
           AL+NYR+KE +   S  +AP+PF KKF                    LP IC K   RS 
Sbjct: 181 ALINYRIKENIGTGSSSSAPVPFAKKFFMQNLRPTSPQPSPATTSRILPFICPKQPSRSS 240

Query: 240 PSLVTANDSVRSKPSFATANDNPRSKYPPAAATSDRSGVPPQSSALESRVF-RPLKFPAA 298
            S + A   +                        DR      ++ALESR + RP +  A 
Sbjct: 241 RSSLAATSGI------------------------DRI----MAAALESRSYQRPQQRFA- 271

Query: 299 GAAPYVPLRQMRSPCHGVAPPVTVRNMVPVFSA 331
              PYVP+RQ RS CHG+APPVT+R  VPVFSA
Sbjct: 272 -NPPYVPMRQFRSQCHGMAPPVTIRTAVPVFSA 303


>AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 |
           chr5:16438547-16439916 FORWARD LENGTH=393
          Length = 393

 Score =  271 bits (693), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 132/189 (69%), Positives = 150/189 (79%), Gaps = 7/189 (3%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCNTLRQAEHSA 60
           MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEH+A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AEVVLSSLSHRGPSRSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEV L+ LS R PS+SL AKILDETG+YKNLLQE A R G  LP YT+ RSG  H P F+
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNSAMAAWSSLKQLAKETASSSSEPENNDELEQITIAR 180
             VELAG+TFTGE AK KKQAEKN+A+AAWSSLK++       SS    ++E EQ  +AR
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------SSLDSQDEEKEQEAVAR 173

Query: 181 ALLNYRLKE 189
            L  ++ KE
Sbjct: 174 VLSRFKPKE 182


>AT3G26932.2 | Symbols: DRB3 | dsRNA-binding protein 3 |
           chr3:9930460-9931714 REVERSE LENGTH=359
          Length = 359

 Score =  265 bits (678), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 151/189 (79%), Gaps = 6/189 (3%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCNTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVVLSSLSHRGPSRSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEV LS+LS +GPS+SL A++LDETG+YKNLLQE A R G  LP YT+ RSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNSAMAAWSSLKQLAKETASSSSEPENNDELEQITIAR 180
             VELAG++F GE AK KKQAEKN+A+AAW SL+++ +       +P   +E EQ  +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 174

Query: 181 ALLNYRLKE 189
            L  +R KE
Sbjct: 175 VLSRFRPKE 183


>AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 |
           chr3:9930460-9931714 REVERSE LENGTH=359
          Length = 359

 Score =  265 bits (678), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 151/189 (79%), Gaps = 6/189 (3%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCNTLRQAEHSA 60
           MYKNQLQELAQRSCF+LPSYTC REGPDHAPRFKA+VNFNGEIFESP YC+TLRQAEHSA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AEVVLSSLSHRGPSRSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           AEV LS+LS +GPS+SL A++LDETG+YKNLLQE A R G  LP YT+ RSG GH+P F+
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query: 121 GIVELAGITFTGEPAKNKKQAEKNSAMAAWSSLKQLAKETASSSSEPENNDELEQITIAR 180
             VELAG++F GE AK KKQAEKN+A+AAW SL+++ +       +P   +E EQ  +AR
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMPR------LDPLRGEEKEQEIVAR 174

Query: 181 ALLNYRLKE 189
            L  +R KE
Sbjct: 175 VLSRFRPKE 183


>AT3G62800.2 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
           | chr3:23225749-23227163 REVERSE LENGTH=355
          Length = 355

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 8/154 (5%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCNTLRQAEHSA 60
           +YK QLQ  A +    LP Y   REGP HAPRF+  V F G+ F+S  +  TL+ AEH+A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AEVVLSSLSHRGPSRSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           A++ ++SL+ + P     A        YKNLLQEIAQ+  + LP Y T  SG  H P FT
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115

Query: 121 GIVELAGITFTGEPAKNKKQAEKNSAMAAWSSLK 154
             VE AG  F+GE AK KK AE ++A  A+ S+K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149


>AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protein 4
           | chr3:23225749-23227163 REVERSE LENGTH=355
          Length = 355

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 8/154 (5%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCNTLRQAEHSA 60
           +YK QLQ  A +    LP Y   REGP HAPRF+  V F G+ F+S  +  TL+ AEH+A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AEVVLSSLSHRGPSRSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           A++ ++SL+ + P     A        YKNLLQEIAQ+  + LP Y T  SG  H P FT
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115

Query: 121 GIVELAGITFTGEPAKNKKQAEKNSAMAAWSSLK 154
             VE AG  F+GE AK KK AE ++A  A+ S+K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149


>AT3G62800.3 | Symbols:  | double-stranded-RNA-binding protein 4 |
           chr3:23225749-23227163 REVERSE LENGTH=329
          Length = 329

 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 8/154 (5%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCNTLRQAEHSA 60
           +YK QLQ  A +    LP Y   REGP HAPRF+  V F G+ F+S  +  TL+ AEH+A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  AEVVLSSLSHRGPSRSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
           A++ ++SL+ + P     A        YKNLLQEIAQ+  + LP Y T  SG  H P FT
Sbjct: 64  AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115

Query: 121 GIVELAGITFTGEPAKNKKQAEKNSAMAAWSSLK 154
             VE AG  F+GE AK KK AE ++A  A+ S+K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149


>AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like
           superfamily protein | chr1:3137960-3140118 REVERSE
           LENGTH=419
          Length = 419

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 3/160 (1%)

Query: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFES-PHYCNTLRQAEHS 59
           ++K++LQE AQ+     P Y  ++EGP H   F++TV  +G  + S P + N  + AE S
Sbjct: 15  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNR-KAAEQS 73

Query: 60  AAEVVLSSLSHRGPSRSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFR-SGLGHLPV 118
           AAEV L  L+         ++ + ETG+ KNLLQE AQ++   +P Y   +   LG +  
Sbjct: 74  AAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQ 133

Query: 119 FTGIVELAGITFTGEPAKNKKQAEKNSAMAAWSSLKQLAK 158
           FT  VE+ GI +TG   + KK AE ++   A  +++   K
Sbjct: 134 FTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTK 173