Miyakogusa Predicted Gene

Lj3g3v1015380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v1015380.1 Non Chatacterized Hit- tr|K3X652|K3X652_PYTUL
Uncharacterized protein OS=Pythium ultimum
GN=PYU1_G01,48,1e-18,seg,NULL; ZF_RING_2,Zinc finger, RING-type;
RING/U-box,NULL,CUFF.42015.1
         (426 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78420.2 | Symbols:  | RING/U-box superfamily protein | chr1:...   372   e-103
AT1G78420.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   372   e-103
AT1G17145.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   335   3e-92

>AT1G78420.2 | Symbols:  | RING/U-box superfamily protein |
           chr1:29505278-29507272 FORWARD LENGTH=401
          Length = 401

 Score =  372 bits (955), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/327 (58%), Positives = 240/327 (73%), Gaps = 13/327 (3%)

Query: 1   MGNKLGRRRQVVDEKFTRPQGLYNHKDVDHKKLRKLILESKLAPCYPGDEESAYDREECP 60
           MGNKLGR+RQVV+E++T+PQGLY +KDVD KKLRKLI+ESKLAPCYPGD+ES +D EECP
Sbjct: 1   MGNKLGRKRQVVEERYTKPQGLYVNKDVDVKKLRKLIVESKLAPCYPGDDESCHDLEECP 60

Query: 61  ICFLYYPSLNRSRCCTKSICTECFLQMKVPNSTRPTQCPFCKTANYAVEYRGVKSKEEKG 120
           ICFLYYPSLNRSRCC KSICTECFLQMK PNS RPTQCPFCKT NYAVEYRGVKSKEEKG
Sbjct: 61  ICFLYYPSLNRSRCCMKSICTECFLQMKNPNSARPTQCPFCKTPNYAVEYRGVKSKEEKG 120

Query: 121 LEQIEEQRVIEAKIRMRQQELQDEEERVHKRLEISSASANVEVADVEYSSNAGATSSVSV 180
           +EQ+EEQRVIEAKIRMRQ+E+QD+EE++ KRLE  S+S +    ++EY S + A S  S+
Sbjct: 121 IEQVEEQRVIEAKIRMRQKEMQDDEEKMQKRLESCSSSTSAMTGEMEYGSTS-AISYNSL 179

Query: 181 VERDEIVSSQDSCATPVVRSPAAVRTNREDEFDVDLEDIMVMEAIWLSIQENGRQRDLSF 240
           ++  EI  SQ++    VVR  +  R NREDE DVDLE++MVMEAIWLS+QE G QR+ + 
Sbjct: 180 MDDGEIAPSQNA---SVVRQHSRPRGNREDEVDVDLEELMVMEAIWLSVQETGTQRNSAS 236

Query: 241 ADASSGHFAANDRYAXXXX------XXXXXXXXXXXXGLACAIAALAERQQMAGETSMSS 294
            + +S      D ++                      GL+CAI+ALAER QM GE+S  +
Sbjct: 237 GEITSSRQYVTDNHSYVSSPPRVTPIVEPATPSSSSGGLSCAISALAER-QMVGESSSHN 295

Query: 295 TNE--SMPSFNMLQGSRRFYNRLGRDV 319
            N   ++ S++ML G+   Y  + ++V
Sbjct: 296 HNHNVNVSSYSMLPGNCDSYYDIEQEV 322


>AT1G78420.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:29505278-29507272 FORWARD LENGTH=401
          Length = 401

 Score =  372 bits (955), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/327 (58%), Positives = 240/327 (73%), Gaps = 13/327 (3%)

Query: 1   MGNKLGRRRQVVDEKFTRPQGLYNHKDVDHKKLRKLILESKLAPCYPGDEESAYDREECP 60
           MGNKLGR+RQVV+E++T+PQGLY +KDVD KKLRKLI+ESKLAPCYPGD+ES +D EECP
Sbjct: 1   MGNKLGRKRQVVEERYTKPQGLYVNKDVDVKKLRKLIVESKLAPCYPGDDESCHDLEECP 60

Query: 61  ICFLYYPSLNRSRCCTKSICTECFLQMKVPNSTRPTQCPFCKTANYAVEYRGVKSKEEKG 120
           ICFLYYPSLNRSRCC KSICTECFLQMK PNS RPTQCPFCKT NYAVEYRGVKSKEEKG
Sbjct: 61  ICFLYYPSLNRSRCCMKSICTECFLQMKNPNSARPTQCPFCKTPNYAVEYRGVKSKEEKG 120

Query: 121 LEQIEEQRVIEAKIRMRQQELQDEEERVHKRLEISSASANVEVADVEYSSNAGATSSVSV 180
           +EQ+EEQRVIEAKIRMRQ+E+QD+EE++ KRLE  S+S +    ++EY S + A S  S+
Sbjct: 121 IEQVEEQRVIEAKIRMRQKEMQDDEEKMQKRLESCSSSTSAMTGEMEYGSTS-AISYNSL 179

Query: 181 VERDEIVSSQDSCATPVVRSPAAVRTNREDEFDVDLEDIMVMEAIWLSIQENGRQRDLSF 240
           ++  EI  SQ++    VVR  +  R NREDE DVDLE++MVMEAIWLS+QE G QR+ + 
Sbjct: 180 MDDGEIAPSQNA---SVVRQHSRPRGNREDEVDVDLEELMVMEAIWLSVQETGTQRNSAS 236

Query: 241 ADASSGHFAANDRYAXXXX------XXXXXXXXXXXXGLACAIAALAERQQMAGETSMSS 294
            + +S      D ++                      GL+CAI+ALAER QM GE+S  +
Sbjct: 237 GEITSSRQYVTDNHSYVSSPPRVTPIVEPATPSSSSGGLSCAISALAER-QMVGESSSHN 295

Query: 295 TNE--SMPSFNMLQGSRRFYNRLGRDV 319
            N   ++ S++ML G+   Y  + ++V
Sbjct: 296 HNHNVNVSSYSMLPGNCDSYYDIEQEV 322


>AT1G17145.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:5860351-5862241 REVERSE LENGTH=335
          Length = 335

 Score =  335 bits (860), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 193/330 (58%), Positives = 228/330 (69%), Gaps = 31/330 (9%)

Query: 1   MGNKLGRRRQVVDEKFTRPQ-GLYNHKDVDHKKLRKLILESKLAPCYPGDEE---SAYDR 56
           MGNKLGR+RQ+VDE++T+PQ GLY  KDVD KKL+KLILESKLAPCYPG EE   S +D 
Sbjct: 1   MGNKLGRKRQIVDERYTKPQQGLYMSKDVDIKKLKKLILESKLAPCYPGLEETPSSHHDL 60

Query: 57  EECPICFLYYPSLNRSRCCTKSICTECFLQMKVPNSTRPTQCPFCKTANYAVEYRGVKSK 116
           EECPICFLYYPSLNRSRCC KSICTECFL+MK PNS +PTQCPFCKT+NYAVEYRG K+K
Sbjct: 61  EECPICFLYYPSLNRSRCCMKSICTECFLRMKSPNSAQPTQCPFCKTSNYAVEYRGGKTK 120

Query: 117 EEKGLEQIEEQRVIEAKIRMRQQELQDEEERVHKRLEISSASANVEVA--DVEYSSNAGA 174
           EEK  EQIEEQRVIEAKIRMRQ+E++D+EER+ KRLE  S+S++   A  D EY S A  
Sbjct: 121 EEKSFEQIEEQRVIEAKIRMRQKEVEDDEERMQKRLESYSSSSSTSAATLDTEYGSAAE- 179

Query: 175 TSSVSVVERDEIVSSQDSCATPVVRSPAAVRTNREDEFDVDLEDIMVMEAIWLSIQENGR 234
                  + +EIVSSQ+SC       P   +  R+ +FD DLEDIMVMEAIWLS+QE G 
Sbjct: 180 -------DDEEIVSSQESCLPS--HHP---QVTRDGQFDFDLEDIMVMEAIWLSMQEPGI 227

Query: 235 QRDLSFADASSGHFAANDRYAXXXXXXXXXXXXXXXXGLACAIAALAERQQMAGETSMSS 294
           QR+ S  D S       DR                  GLACAIA LAERQQM G  S S+
Sbjct: 228 QRNTSPDDISE-----KDR----NEEPSTPSSSSPSGGLACAIAVLAERQQMVG-VSSSN 277

Query: 295 TNESMPSFNML--QGSRRFYNRLGRDVVSY 322
            N ++ S N++   G+   YN + +D   Y
Sbjct: 278 QNVNLASQNLVPDNGNNSHYNAIEQDSNHY 307