Miyakogusa Predicted Gene

Lj3g3v1011060.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj3g3v1011060.1 tr|G7JF16|G7JF16_MEDTR ABC transporter B family
member OS=Medicago truncatula GN=MTR_4g081190 PE=3 S,86.05,0,no
description,NULL; seg,NULL; ATPases associated with a variety of
cellula,AAA+ ATPase domain; SUBF,CUFF.41997.1
         (3771 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC64957 similar to UniRef100_A7P469 Cluster: Chromosome...    88   5e-16
gnl|LJGI|BP055390 similar to UniRef100_A7QER8 Cluster: Chromosom...    68   4e-10

>gnl|LJGI|TC64957 similar to UniRef100_A7P469 Cluster: Chromosome chr1 scaffold_5,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr1 scaffold_5, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (12%)
          Length = 734

 Score = 87.7 bits (44), Expect = 5e-16
 Identities = 179/224 (79%)
 Strand = Plus / Plus

                                                                        
Query: 3373 aatgctcatgaattcataagtggaatgaatgatggatatgacacatactgtggagaaaga 3432
            |||||||| || || ||||||  |||||  ||||| ||||| ||||||||||||||||||
Sbjct: 81   aatgctcacgagtttataagttcaatgagagatgggtatgatacatactgtggagaaaga 140

                                                                        
Query: 3433 ggagttcaactttcaggaggtcagaaacaaagaatagccatagctcgagccatactgaag 3492
            || || || || || ||||| ||||| || || ||||| || |||||||| || || |||
Sbjct: 141  ggggtgcagctctctggagggcagaagcagaggatagcaattgctcgagcaatgctcaag 200

                                                                        
Query: 3493 aatcctgcaattcttcttctcgatgaggcaacaagtgcacttgacagtgcctcagagatc 3552
            |||||  |||| |||||  | ||||||||||| ||||| || ||||| |  |||||||  
Sbjct: 201  aatccatcaatccttctgttagatgaggcaacgagtgctctagacagcgagtcagagaat 260

                                                        
Query: 3553 ttggtccaagaagcacttgagaagataatggttggaagaacatg 3596
             |||| || || || || || ||||| |||||||||||||||||
Sbjct: 261  ctggtgcaggaggcgctagaaaagatgatggttggaagaacatg 304


>gnl|LJGI|BP055390 similar to UniRef100_A7QER8 Cluster: Chromosome chr16 scaffold_86,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr16 scaffold_86, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (7%)
          Length = 473

 Score = 67.9 bits (34), Expect = 4e-10
 Identities = 106/130 (81%)
 Strand = Plus / Plus

                                                                        
Query: 3445 tcaggaggtcagaaacaaagaatagccatagctcgagccatactgaagaatcctgcaatt 3504
            ||||| ||||||||||| ||||| || |||||  ||||||| ||||| |||||| | || 
Sbjct: 234  tcagggggtcagaaacagagaattgcaatagcaagagccattctgaaaaatcctcctatc 293

                                                                        
Query: 3505 cttcttctcgatgaggcaacaagtgcacttgacagtgcctcagagatcttggtccaagaa 3564
            |||||||| |||||||| || ||||| ||||| |  |  ||||| |   |||||||||||
Sbjct: 294  cttcttcttgatgaggctactagtgcccttgatacggagtcagaaaagctggtccaagaa 353

                      
Query: 3565 gcacttgaga 3574
            ||||||||||
Sbjct: 354  gcacttgaga 363