Miyakogusa Predicted Gene

Lj3g3v0965940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0965940.1 Non Characterized Hit- tr|I1MJ65|I1MJ65_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.50128
PE,79.78,0,PAT1,Topoisomerase II-associated protein PAT1;
TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1,NULL; seg,NU,CUFF.41924.1
         (820 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g069550.1 | topoisomerase II-associated protein PAT1, puta...  1120   0.0  
Medtr2g069530.1 | topoisomerase II-associated protein PAT1 | HC ...   885   0.0  

>Medtr2g069550.1 | topoisomerase II-associated protein PAT1,
           putative | HC | chr2:28950076-28956943 | 20130731
          Length = 825

 Score = 1120 bits (2896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/811 (70%), Positives = 631/811 (77%), Gaps = 11/811 (1%)

Query: 13  VQSGDVPTEGEVFDASQYAFFGK-XXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXX 71
           + +GD+P EG VFDA+QYAFFG+                  P                  
Sbjct: 21  LAAGDIPKEGAVFDATQYAFFGQDACVEEVELGGLDDDDGLPESNEEEFLLNREEVEDVK 80

Query: 72  XXXXXXXXXTNFWKLNKVESGPKSAAVIGDQGSRENSTAEWANRNDVQNWFEQSAYDSEG 131
                    T+FWKLNKVE GP++ A+ G++GSRENSTAEW  RND  NWF+Q+ YDSEG
Sbjct: 81  SLSDIDDLSTDFWKLNKVEIGPQNTAIFGERGSRENSTAEWTQRNDNLNWFDQNPYDSEG 140

Query: 132 SLDGRRLSSQPYSSLSHLPEPKPLYRTASYPEXXXXXXXXXXX-GPGESVPNWFDQHAYD 190
           SLDGRRLSSQPYSS + L E   LYRT+SYPE            G  ESVPN FDQ   D
Sbjct: 141 SLDGRRLSSQPYSSFAPLQESNSLYRTSSYPEQQRQQQQHYLQHGSSESVPNRFDQPFRD 200

Query: 191 SETTQDGKRWSSQPHSSIAHLEESKSLYRTSLYPEKQQEHPHFSSEPVLVPNSSFTXXXX 250
           SET QDGKRWSSQPHS+IAH+EESKSLY TSLYP+KQQE  HFS++  L P   FT    
Sbjct: 201 SET-QDGKRWSSQPHSNIAHIEESKSLYSTSLYPDKQQELLHFSNDSTLAP---FTSYPP 256

Query: 251 XXXXXXXXXXXNNTGYLNIPHNAIGAQMALSSQNRSRFSNPALQLGGLNHGLPFSGNMNQ 310
                      +NTG +NIP++A GAQMALSSQNRS  SN ALQLGGLNHG P SGNM Q
Sbjct: 257 PGGRALQSSPSHNTGPINIPYHAAGAQMALSSQNRSHLSNSALQLGGLNHGSPLSGNMRQ 316

Query: 311 FPTGSPFNQRIQNQLVNQAGFYSGDHPNFSSGLPMLNKYDQMLGIMELRDQLPKSALLGR 370
            P GSP NQRIQN LV+QAG Y+G HP  SSGLPM+NKYDQMLG+MELRDQ+PKSA +GR
Sbjct: 317 IPMGSPLNQRIQNPLVSQAGLYNGAHPKISSGLPMINKYDQMLGMMELRDQMPKSAQIGR 376

Query: 371 QNLRFPPQGFDLSFN-RSNNGWPRFRSKYMTTEEIENILRMQLAATHSNDPYVDDYYHQG 429
           QNLRF PQGFD+S N + NNGWPRFRSKYMTTEE+ENI R+QLAATH+NDPYVDDYY+QG
Sbjct: 377 QNLRFSPQGFDMSNNHKFNNGWPRFRSKYMTTEELENIFRLQLAATHTNDPYVDDYYNQG 436

Query: 430 CLAKKSAGAKLRHHFCPNQIKEHPLRGSANTEQHAFLQVDALGRVPFSSIRRPRPLLEVD 489
           CLAKKS+GAKLR HF P QI+E PLR S+N E HAFLQVDALGRVPFSSIRRPRPLLEV+
Sbjct: 437 CLAKKSSGAKLRRHFSPAQIREIPLRASSN-EPHAFLQVDALGRVPFSSIRRPRPLLEVE 495

Query: 490 PPNSSRASSPEQNVSEKPLEQEPLLAARVTIEDGLCLLLDVDDIDRFLQFN-QLQDGGIQ 548
           PPNSSRA   EQN+SEKPLEQEP+LAARVTIEDGLC+LLDVDDIDRFLQFN QLQDGG  
Sbjct: 496 PPNSSRAGGSEQNISEKPLEQEPMLAARVTIEDGLCVLLDVDDIDRFLQFNKQLQDGGDH 555

Query: 549 LKHKRQGLLEGLAASLHLVDPLGKSGHTVMHVANDDVVFLRIVSLPKGRKLLARYLQILF 608
           LK KRQGLLEGL+ASL LVDPLG+ G TV   A DD VFLRI+SLPKGRKLLARYL++LF
Sbjct: 556 LKRKRQGLLEGLSASLQLVDPLGRIGQTVELAAKDDYVFLRILSLPKGRKLLARYLELLF 615

Query: 609 PGGELMRIVCMAIFRHFRFLFGGLPSDPVAAETVSNLARVVSKCLREMDXXXXXXXXXXX 668
           PGG+LMRIVCMAIFRH RFLFG LPSDPVA+ETV NLA+VVSKC+REMD           
Sbjct: 616 PGGDLMRIVCMAIFRHLRFLFGALPSDPVASETVINLAKVVSKCVREMDLVALSVCLASV 675

Query: 669 XXXXEQPPLRPLGSPAGDGASLILVSVLERATELLTDPHAASNYNIANRSLWQASFDEFF 728
               E PPLRPLGSP GDG SLILVSVLERATE+LTDPHAASNYNI NRSLWQASFDEFF
Sbjct: 676 VCSAEPPPLRPLGSPVGDGTSLILVSVLERATEVLTDPHAASNYNIRNRSLWQASFDEFF 735

Query: 729 GLLAKYCVNKYDSIMQSFLNQGTPNMAVIGSEAARAISREMPVELLRASLPHTDDRQKKI 788
           GLL KYCVNKYDSIMQSFL QGT NMAVIG + ARAISREMPVELLRASLPHTDDRQKKI
Sbjct: 736 GLLTKYCVNKYDSIMQSFLAQGTSNMAVIGPDVARAISREMPVELLRASLPHTDDRQKKI 795

Query: 789 LLDFAHRSLPVVGFNSSAGGNGNHVNSESVL 819
           LLDFA RS  VVG++S+AGGNG+H NS+SV+
Sbjct: 796 LLDFAQRS--VVGYSSNAGGNGHHANSQSVM 824


>Medtr2g069530.1 | topoisomerase II-associated protein PAT1 | HC |
           chr2:28933010-28942411 | 20130731
          Length = 880

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/857 (57%), Positives = 565/857 (65%), Gaps = 50/857 (5%)

Query: 14  QSGDVPTEG-EVFDASQYAFFGKXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXX 72
           Q G VP  G  VFDASQYAFFGK                 P                   
Sbjct: 24  QLGHVPVSGGAVFDASQYAFFGKDAVQEVELGGLEEDARLPTFESNEEEFFFNREQDEDV 83

Query: 73  XXXXXXX--XTNFWKLNKVESGPKSAAVIGDQGSRENSTAEWANRNDVQNWFEQSAYDSE 130
                     T FWKLNK  SGP++  VIG++GSRENST++ A R+DV +WF+Q+AYDSE
Sbjct: 84  RSLSDIDDLTTTFWKLNKAVSGPRNPGVIGERGSRENSTSDLAQRDDVHSWFDQNAYDSE 143

Query: 131 GSLDGRRLSSQPYSSLSHLPEPKPLYRTASYPEXXXXXXXXX-XXGPGESVPNWFDQHAY 189
           GS+DG+R SSQP SSL+HL   K LYRT+SYPE               E V NW DQH Y
Sbjct: 144 GSIDGKRWSSQPQSSLAHLQNSKSLYRTSSYPEQLRQEQNYHLQHCSSEPVHNWLDQHIY 203

Query: 190 DSETTQDGKRWSSQPHSSIAHLEESKSLYRTSLYPEKQQEHPHFSSEPVLVPNSSFTXXX 249
           D ET  D KRWSSQPH+SI HL ES  LYRTS YP+KQQE   FSSEP+LV  SSFT   
Sbjct: 204 DIETAHDEKRWSSQPHTSIPHLHESTPLYRTSSYPDKQQELTRFSSEPILVQKSSFTSYP 263

Query: 250 XXXXXXXXXXXXNNTGYLNIP-HNAIGAQMALSSQNRSRFSNPALQLGGLNHGLPFSGNM 308
                       ++TG+LNIP H    AQMALSSQNR  FSN ALQL GLN G  F GN 
Sbjct: 264 PPGGRSQQGSPSHSTGHLNIPYHTGAAAQMALSSQNRPHFSNSALQLSGLNLGSHFGGNT 323

Query: 309 NQFPTGS-PFNQRIQNQLVNQAGFYSGDHPNFSSGL------------------------ 343
            Q+ TGS P +QRIQNQLV+QAG Y GD  N  S +                        
Sbjct: 324 RQYSTGSSPLSQRIQNQLVSQAGLYPGDRSNLLSNMLQQQLQLHNGSVSPHLMTQLQQQQ 383

Query: 344 -----PMLNKYDQMLG---------------IMELRDQLPKSALLGRQNLRFPPQGFDLS 383
                P+      + G               +    D   KS+  G+ + R   QG D S
Sbjct: 384 HRLHHPVQQSAGYLSGFQSHLFNPHLSPSSSVNSKYDHRHKSSQKGKHSHRLSHQGSDAS 443

Query: 384 FNRSNNGWPRFRSKYMTTEEIENILRMQLAATHSNDPYVDDYYHQGCLAKKSAGAKLRHH 443
             +S +   +FRSK+MT++EIE+ILRMQLA THSNDPY+DDYYHQG LAKK + AKL+H 
Sbjct: 444 SQKSESSSLQFRSKHMTSDEIESILRMQLAVTHSNDPYIDDYYHQGRLAKKPSVAKLKHP 503

Query: 444 FCPNQIKEHPLRGSANTEQHAFLQVDALGRVPFSSIRRPRPLLEVDPPNSSRASSPEQNV 503
           FCP QIKE P R  ++ + HAFLQVD+LGRV FSSIRRPRPLLE D  NSS   S +  +
Sbjct: 504 FCPTQIKELPSRTRSSNDPHAFLQVDSLGRVSFSSIRRPRPLLEADSSNSSIPGSSDLKI 563

Query: 504 SEKPLEQEPLLAARVTIEDGLCLLLDVDDIDRFLQFNQLQDGGIQLKHKRQGLLEGLAAS 563
           SEKPLEQEP  AARVTIEDGLCLLLDVDDIDR+LQ NQ QDGG QL+ +RQ LLEGLA S
Sbjct: 564 SEKPLEQEPTFAARVTIEDGLCLLLDVDDIDRYLQSNQPQDGGTQLRRRRQVLLEGLATS 623

Query: 564 LHLVDPLGKSGHTVMHVANDDVVFLRIVSLPKGRKLLARYLQILFPGGELMRIVCMAIFR 623
           L LVDPLGK+GH V   A DD+VF+RIVS+PKGRKLLA+YLQ+L PG +LMRIVCM + R
Sbjct: 624 LQLVDPLGKNGHKVGLAAKDDLVFIRIVSVPKGRKLLAKYLQLLLPGSDLMRIVCMTVLR 683

Query: 624 HFRFLFGGLPSDPVAAETVSNLARVVSKCLREMDXXXXXXXXXXXXXXXEQPPLRPLGSP 683
           H RFLFGGLPSDP AA T  NLA VV +C+R MD               E PPLRP+GS 
Sbjct: 684 HLRFLFGGLPSDPAAAVTTCNLAEVVCQCIRGMDLGALSACLAAVVCSAEHPPLRPVGST 743

Query: 684 AGDGASLILVSVLERATELLTDPHAASNYNIANRSLWQASFDEFFGLLAKYCVNKYDSIM 743
           AGDGASLILVSVLERATELLTDP AA NYN+ NRS WQASFDEFFGL+ KYC+NKY SIM
Sbjct: 744 AGDGASLILVSVLERATELLTDPQAACNYNMGNRSFWQASFDEFFGLITKYCMNKYHSIM 803

Query: 744 QSFLNQGTPNMAVIGSEAARAISREMPVELLRASLPHTDDRQKKILLDFAHRSLPVVGFN 803
           QS L Q  PN+  IGS+AA+AIS+EMPVELLRASLPHTDDRQ+K+LLDFA RS+PV+GFN
Sbjct: 804 QSLLLQNAPNVDDIGSDAAKAISKEMPVELLRASLPHTDDRQRKLLLDFAQRSVPVIGFN 863

Query: 804 SSAGGNGNHVNSESVLS 820
           S+AGG+G  VNSE+VLS
Sbjct: 864 SNAGGSGGLVNSETVLS 880