Miyakogusa Predicted Gene
- Lj3g3v0965940.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0965940.1 Non Chatacterized Hit- tr|I1MJ65|I1MJ65_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.50128
PE,79.78,0,PAT1,Topoisomerase II-associated protein PAT1;
TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1,NULL; seg,NU,CUFF.41924.1
(2466 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC77683 similar to UniRef100_A7PWT9 Cluster: Chromosome... 765 0.0
gnl|LJGI|TC65785 761 0.0
gnl|LJGI|FS319698 252 9e-66
gnl|LJGI|TC70107 similar to UniRef100_A7PWT9 Cluster: Chromosome... 196 5e-49
gnl|LJGI|DC598593 121 2e-26
>gnl|LJGI|TC77683 similar to UniRef100_A7PWT9 Cluster: Chromosome chr19 scaffold_35,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_35, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 1317
Score = 765 bits (386), Expect = 0.0
Identities = 431/438 (98%), Gaps = 6/438 (1%)
Strand = Plus / Plus
Query: 2035 ccccttggaagccctgctggagacggggcttcccttattttagtatctgtgcttgagagg 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccccttggaagccctgctggagacggggcttcccttattttagtatctgtgcttgagagg 60
Query: 2095 gctactgaactgctcactgatcctcatgctgcaagcaactataatatcgcaaatcgttct 2154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctactgaactgctcactgatcctcatgctgcaagcaactataatatcgcaaatcgttct 120
Query: 2155 ctttggcaggcttcattcgatgaattttttggtcttctcgccaagtattgtgtgaataaa 2214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctttggcaggcttcattcgatgaattttttggtcttctcgccaagtattgtgtgaataaa 180
Query: 2215 tatgatagtatcatgcaatcattccttaatcaagggacaccaaatatggctgtaattggg 2274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatgatagtatcatgcaatcattccttaatcaagggacaccaaatatggctgtaattggg 240
Query: 2275 tcagaagctgcta-gagcaattag-caggg-aaatg-ccagt-tgagctt-ttgcgtgca 2328
||||||||||||| ||||||||| ||||| ||||| ||||| ||||||| |||||||||
Sbjct: 241 tcagaagctgctatgagcaattaatcagggcaaatggccagtctgagcttattgcgtgca 300
Query: 2329 agtctgcctcacacagatgatcgccagaagaagatattacttgattttgctcaccgctct 2388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtctgcctcacacagatgatcgccagaagaagatattacttgattttgctcaccgctct 360
Query: 2389 ttacctgtagttgggtttaacagtagtgctgggggtaatggtaaccatgtgaactcagag 2448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttacctgtagttgggtttaacagtagtgctgggggtaatggtaaccatgtgaactcagag 420
Query: 2449 tcagtgctgagttaattg 2466
||||||||||||||||||
Sbjct: 421 tcagtgctgagttaattg 438
>gnl|LJGI|TC65785
Length = 940
Score = 761 bits (384), Expect = 0.0
Identities = 384/384 (100%)
Strand = Plus / Plus
Query: 1 atgctggacatggatgtgtttggaggtgggggtgatgtgcaatcgggggatgttccaacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atgctggacatggatgtgtttggaggtgggggtgatgtgcaatcgggggatgttccaacg 616
Query: 61 gaaggtgaagtttttgatgcatcacaatatgcatttttcggtaaagatgttttggaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaaggtgaagtttttgatgcatcacaatatgcatttttcggtaaagatgttttggaggaa 676
Query: 121 gttgagttgggcgggctagaagatgatgacttattgcctgagtctaatgaggaggagttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gttgagttgggcgggctagaagatgatgacttattgcctgagtctaatgaggaggagttc 736
Query: 181 cttcttaacagagaagaggctgaggatataaaatctctttctgatattgatgatctaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cttcttaacagagaagaggctgaggatataaaatctctttctgatattgatgatctaagt 796
Query: 241 accaatttttggaagttgaacaaggttgaaagtggaccaaaatctgcagcagttattggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 accaatttttggaagttgaacaaggttgaaagtggaccaaaatctgcagcagttattggt 856
Query: 301 gatcagggttcaagagaaaattctacagctgaatgggcaaacaggaatgacgttcagaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gatcagggttcaagagaaaattctacagctgaatgggcaaacaggaatgacgttcagaac 916
Query: 361 tggtttgaacagagtgcttatgac 384
||||||||||||||||||||||||
Sbjct: 917 tggtttgaacagagtgcttatgac 940
>gnl|LJGI|FS319698
Length = 223
Score = 252 bits (127), Expect = 9e-66
Identities = 148/155 (95%)
Strand = Plus / Plus
Query: 66 tgaagtttttgatgcatcacaatatgcatttttcggtaaagatgttttggaggaagttga 125
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 69 tgaagtttttgatgcatcacaatatgcatttttcggtaaaaatgttttggaggaagttga 128
Query: 126 gttgggcgggctagaagatgatgacttattgcctgagtctaatgaggaggagttccttct 185
||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gttgggcgggctaaaaaaagatgacttattgcctgagtctaatgaggaggagttccttct 188
Query: 186 taacagagaagaggctgaggatataaaatctcttt 220
||||| | || ||||||||||||||||||||||||
Sbjct: 189 taacaaaaaaaaggctgaggatataaaatctcttt 223
>gnl|LJGI|TC70107 similar to UniRef100_A7PWT9 Cluster: Chromosome chr19 scaffold_35,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_35, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (14%)
Length = 855
Score = 196 bits (99), Expect = 5e-49
Identities = 225/267 (84%)
Strand = Plus / Plus
Query: 2121 tgctgcaagcaactataatatcgcaaatcgttctctttggcaggcttcattcgatgaatt 2180
|||||| |||||||||||||| | |||||||| |||||||||| ||||| ||||||||
Sbjct: 6 tgctgctagcaactataatataggtaatcgttcattttggcaggcctcatttgatgaatt 65
Query: 2181 ttttggtcttctcgccaagtattgtgtgaataaatatgatagtatcatgcaatcattcct 2240
|||||| |||||| | |||||||| |||||||||| |||| ||||||||||| | |
Sbjct: 66 ttttggccttctcacgaagtattgcatgaataaataccatagcatcatgcaatcgctggt 125
Query: 2241 taatcaagggacaccaaatatggctgtaattgggtcagaagctgctagagcaattagcag 2300
|| |||||| |||||||| ||||||||||||| ||||| ||||||| ||||||||| |
Sbjct: 126 tacacaaggggcaccaaatgtggctgtaattggatcagatgctgctaaagcaattagtaa 185
Query: 2301 ggaaatgccagttgagcttttgcgtgcaagtctgcctcacacagatgatcgccagaagaa 2360
||||||||| ||||| || || ||||||||||| |||||||| ||||| | ||||| |||
Sbjct: 186 ggaaatgcctgttgaactcttacgtgcaagtcttcctcacactgatgaccaccagaggaa 245
Query: 2361 gatattacttgattttgctcaccgctc 2387
| | ||||| ||||||||||| |||||
Sbjct: 246 gttgttactggattttgctcagcgctc 272
>gnl|LJGI|DC598593
Length = 573
Score = 121 bits (61), Expect = 2e-26
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 atgctggacatggatgtgtttggaggtgggggtgatgtgcaatcgggggatgttccaacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atgctggacatggatgtgtttggaggtgggggtgatgtgcaatcgggggatgttccaacg 361
Query: 61 g 61
|
Sbjct: 362 g 362