Miyakogusa Predicted Gene

Lj3g3v0730080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0730080.1 tr|B9HZI1|B9HZI1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_568170 PE=4
SV=1,31.08,5e-19,AvrRpt-cleavage,Pathogenic type III effector
avirulence factor Avr cleavage site,CUFF.41225.1
         (250 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g012960.2 | RPM1 interacting protein 4 transcript protein ...   381   e-106
Medtr8g012960.1 | RPM1 interacting protein 4 transcript protein ...   381   e-106
Medtr7g056147.2 | RPM1 interacting protein 4 transcript protein ...   331   4e-91
Medtr7g056147.1 | RPM1 interacting protein 4 transcript protein ...   331   5e-91
Medtr7g056147.3 | RPM1 interacting protein 4 transcript protein ...   269   2e-72
Medtr4g104085.1 | RPM1-interacting protein 4 (RIN4) family prote...    60   2e-09
Medtr2g025170.1 | RPM1-interacting protein 4 (RIN4) family prote...    57   1e-08
Medtr5g096030.1 | RPM1-interacting protein 4 (RIN4) family prote...    57   2e-08
Medtr8g089560.1 | RPM1-interacting protein 4 (RIN4) family prote...    55   7e-08
Medtr3g086160.1 | RPM1-interacting protein 4 (RIN4) family prote...    52   4e-07
Medtr5g098260.1 | RPM1-interacting protein 4 (RIN4) family prote...    49   4e-06

>Medtr8g012960.2 | RPM1 interacting protein 4 transcript protein |
           HC | chr8:3947090-3941471 | 20130731
          Length = 260

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/265 (76%), Positives = 224/265 (84%), Gaps = 20/265 (7%)

Query: 1   MAQRSHVPKFGNWDGEDNVPYTAYFDKARKDRTGTKMINPNDPEENSDLVLDNNL----P 56
           MAQR+HVPKFGNW+  DNVPYTAYFDKARK RTGTKMINPNDPEEN DLVLDN+     P
Sbjct: 1   MAQRTHVPKFGNWESNDNVPYTAYFDKARKGRTGTKMINPNDPEENVDLVLDNSSSDHPP 60

Query: 57  PSKSKPGVDSEDPSGKGSARSTYESHRSMEDGDPKQFVDSPARQ-------ANDSAPRYG 109
           PS +KP  +SED SGKG  RST ESH+S+ DGDPKQ+VDSPAR        +NDS PR G
Sbjct: 61  PSNTKPRANSEDLSGKGLVRSTIESHKSL-DGDPKQYVDSPARHDNASNRSSNDSTPRLG 119

Query: 110 GQGVGSADNRKRPSRQST-GSEYSIERSPLHRQAKTP-GRDSPSWEGKS-SYDSNHGTPG 166
              VGSADNR+RPSRQST GSE+S+ERSPLHRQA+ P GRDSPSWEGK+ SYDS+HGTPG
Sbjct: 120 ---VGSADNRRRPSRQSTAGSEHSVERSPLHRQARAPAGRDSPSWEGKNNSYDSSHGTPG 176

Query: 167 RSRLRPVNRGDETPEKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGGAGNALGTP- 225
           RSRLRP NRGDETP+KGAAVPKFG+WDVSNPASADG+THIFNKVREERQGGAG+A GTP 
Sbjct: 177 RSRLRPANRGDETPDKGAAVPKFGDWDVSNPASADGYTHIFNKVREERQGGAGHAPGTPN 236

Query: 226 ERPHVIRSQPSNDKVQCCCFGFSKK 250
           ERPHVIR+Q +NDK QCCCF + KK
Sbjct: 237 ERPHVIRNQ-NNDKAQCCCFAWGKK 260


>Medtr8g012960.1 | RPM1 interacting protein 4 transcript protein |
           HC | chr8:3947114-3943191 | 20130731
          Length = 260

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/265 (76%), Positives = 224/265 (84%), Gaps = 20/265 (7%)

Query: 1   MAQRSHVPKFGNWDGEDNVPYTAYFDKARKDRTGTKMINPNDPEENSDLVLDNNL----P 56
           MAQR+HVPKFGNW+  DNVPYTAYFDKARK RTGTKMINPNDPEEN DLVLDN+     P
Sbjct: 1   MAQRTHVPKFGNWESNDNVPYTAYFDKARKGRTGTKMINPNDPEENVDLVLDNSSSDHPP 60

Query: 57  PSKSKPGVDSEDPSGKGSARSTYESHRSMEDGDPKQFVDSPARQ-------ANDSAPRYG 109
           PS +KP  +SED SGKG  RST ESH+S+ DGDPKQ+VDSPAR        +NDS PR G
Sbjct: 61  PSNTKPRANSEDLSGKGLVRSTIESHKSL-DGDPKQYVDSPARHDNASNRSSNDSTPRLG 119

Query: 110 GQGVGSADNRKRPSRQST-GSEYSIERSPLHRQAKTP-GRDSPSWEGKS-SYDSNHGTPG 166
              VGSADNR+RPSRQST GSE+S+ERSPLHRQA+ P GRDSPSWEGK+ SYDS+HGTPG
Sbjct: 120 ---VGSADNRRRPSRQSTAGSEHSVERSPLHRQARAPAGRDSPSWEGKNNSYDSSHGTPG 176

Query: 167 RSRLRPVNRGDETPEKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGGAGNALGTP- 225
           RSRLRP NRGDETP+KGAAVPKFG+WDVSNPASADG+THIFNKVREERQGGAG+A GTP 
Sbjct: 177 RSRLRPANRGDETPDKGAAVPKFGDWDVSNPASADGYTHIFNKVREERQGGAGHAPGTPN 236

Query: 226 ERPHVIRSQPSNDKVQCCCFGFSKK 250
           ERPHVIR+Q +NDK QCCCF + KK
Sbjct: 237 ERPHVIRNQ-NNDKAQCCCFAWGKK 260


>Medtr7g056147.2 | RPM1 interacting protein 4 transcript protein |
           HC | chr7:19567302-19571423 | 20130731
          Length = 249

 Score =  331 bits (848), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 175/258 (67%), Positives = 203/258 (78%), Gaps = 19/258 (7%)

Query: 1   MAQRSHVPKFGNWDGEDNVPYTAYFDKARKDRTGTKMINPNDPEENSDLVLDNN-----L 55
           + QRSHVPKFGNW+GED+VPYT YFDKARK R G+KMINPNDPEEN DLVL N+     +
Sbjct: 3   ICQRSHVPKFGNWEGEDDVPYTVYFDKARKSRPGSKMINPNDPEENPDLVLQNSSSDDVI 62

Query: 56  PPSKSKPGVDSEDPSGKGSARSTY-ESHRSMEDGDPKQFVDSPARQANDSAPRYGGQGVG 114
           PP   KP V SE+ S KG+ R T+ +  ++ E+GD K  V+SPAR         GG GVG
Sbjct: 63  PP---KPRVSSENQSEKGTVRLTHNDLQKNKEEGDVKHSVNSPARP--------GGHGVG 111

Query: 115 SADNRKRPSRQSTGS-EYSIERSPLHRQAKTPGRDSPSWEGKSSYDSNHGTPGRSRLRPV 173
           SAD+R+RPSRQST S EYS+ERSPLHRQAKTPGRDSPSWEGKS+YDS+HGTPGRSRLRPV
Sbjct: 112 SADSRRRPSRQSTASSEYSVERSPLHRQAKTPGRDSPSWEGKSTYDSSHGTPGRSRLRPV 171

Query: 174 NRGDETPEKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGGAGNALGTPE-RPHVIR 232
           NR DE P+K AAVPKFGEWD S+PASADG+THIFNKVREE+   AGN  GTP  R +VIR
Sbjct: 172 NRDDEIPDKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNTPGTPNGRSYVIR 231

Query: 233 SQPSNDKVQCCCFGFSKK 250
           +QP+NDK Q CCF + +K
Sbjct: 232 NQPANDKAQGCCFFWGRK 249


>Medtr7g056147.1 | RPM1 interacting protein 4 transcript protein |
           HC | chr7:19567292-19571440 | 20130731
          Length = 248

 Score =  331 bits (848), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 175/258 (67%), Positives = 202/258 (78%), Gaps = 19/258 (7%)

Query: 1   MAQRSHVPKFGNWDGEDNVPYTAYFDKARKDRTGTKMINPNDPEENSDLVLDNN-----L 55
             QRSHVPKFGNW+GED+VPYT YFDKARK R G+KMINPNDPEEN DLVL N+     +
Sbjct: 2   TTQRSHVPKFGNWEGEDDVPYTVYFDKARKSRPGSKMINPNDPEENPDLVLQNSSSDDVI 61

Query: 56  PPSKSKPGVDSEDPSGKGSARSTY-ESHRSMEDGDPKQFVDSPARQANDSAPRYGGQGVG 114
           PP   KP V SE+ S KG+ R T+ +  ++ E+GD K  V+SPAR         GG GVG
Sbjct: 62  PP---KPRVSSENQSEKGTVRLTHNDLQKNKEEGDVKHSVNSPARP--------GGHGVG 110

Query: 115 SADNRKRPSRQSTGS-EYSIERSPLHRQAKTPGRDSPSWEGKSSYDSNHGTPGRSRLRPV 173
           SAD+R+RPSRQST S EYS+ERSPLHRQAKTPGRDSPSWEGKS+YDS+HGTPGRSRLRPV
Sbjct: 111 SADSRRRPSRQSTASSEYSVERSPLHRQAKTPGRDSPSWEGKSTYDSSHGTPGRSRLRPV 170

Query: 174 NRGDETPEKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGGAGNALGTPE-RPHVIR 232
           NR DE P+K AAVPKFGEWD S+PASADG+THIFNKVREE+   AGN  GTP  R +VIR
Sbjct: 171 NRDDEIPDKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNTPGTPNGRSYVIR 230

Query: 233 SQPSNDKVQCCCFGFSKK 250
           +QP+NDK Q CCF + +K
Sbjct: 231 NQPANDKAQGCCFFWGRK 248


>Medtr7g056147.3 | RPM1 interacting protein 4 transcript protein |
           HC | chr7:19567292-19571440 | 20130731
          Length = 211

 Score =  269 bits (688), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/222 (66%), Positives = 171/222 (77%), Gaps = 19/222 (8%)

Query: 37  MINPNDPEENSDLVLDNN-----LPPSKSKPGVDSEDPSGKGSARSTY-ESHRSMEDGDP 90
           MINPNDPEEN DLVL N+     +PP   KP V SE+ S KG+ R T+ +  ++ E+GD 
Sbjct: 1   MINPNDPEENPDLVLQNSSSDDVIPP---KPRVSSENQSEKGTVRLTHNDLQKNKEEGDV 57

Query: 91  KQFVDSPARQANDSAPRYGGQGVGSADNRKRPSRQSTGS-EYSIERSPLHRQAKTPGRDS 149
           K  V+SPAR         GG GVGSAD+R+RPSRQST S EYS+ERSPLHRQAKTPGRDS
Sbjct: 58  KHSVNSPARP--------GGHGVGSADSRRRPSRQSTASSEYSVERSPLHRQAKTPGRDS 109

Query: 150 PSWEGKSSYDSNHGTPGRSRLRPVNRGDETPEKGAAVPKFGEWDVSNPASADGFTHIFNK 209
           PSWEGKS+YDS+HGTPGRSRLRPVNR DE P+K AAVPKFGEWD S+PASADG+THIFNK
Sbjct: 110 PSWEGKSTYDSSHGTPGRSRLRPVNRDDEIPDKSAAVPKFGEWDESDPASADGYTHIFNK 169

Query: 210 VREERQGGAGNALGTPE-RPHVIRSQPSNDKVQCCCFGFSKK 250
           VREE+   AGN  GTP  R +VIR+QP+NDK Q CCF + +K
Sbjct: 170 VREEKHVAAGNTPGTPNGRSYVIRNQPANDKAQGCCFFWGRK 211


>Medtr4g104085.1 | RPM1-interacting protein 4 (RIN4) family protein
           | HC | chr4:43086977-43089894 | 20130731
          Length = 108

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 181 EKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGGAGNALGTP 225
           +KG  +PKFGEWDV+NPASA+GFT IFNK R+E++      + TP
Sbjct: 19  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNTSINMATP 63


>Medtr2g025170.1 | RPM1-interacting protein 4 (RIN4) family protein
           | HC | chr2:8954695-8955548 | 20130731
          Length = 192

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 15/144 (10%)

Query: 119 RKRPSRQSTGSEY-----SIERSPLHRQAKTPGRDSPSWEGKSSYDSNHGTPGRSRLRPV 173
           R R S+ S  SE+      I+ S +++ +++  + S S    S+  S   +  RS  R  
Sbjct: 49  RSRGSKGSFTSEFGSEKSHIDHSVINKTSQSEHKRSVSKGIGSNTGSFSSSNHRSESRSF 108

Query: 174 NRGDETPEKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGGAGNALGTPERPH---- 229
           N  D    +  A+P+FG+WDV++P S +G+T +F+K++EE+Q  +    G    PH    
Sbjct: 109 N--DHGDHRAVAIPEFGKWDVTDPKSGEGYTVMFSKIKEEKQIMSSRISGLRTTPHNNGS 166

Query: 230 VIRSQPS----NDKVQCCCFGFSK 249
            I++Q      N    CCC   S+
Sbjct: 167 NIKNQHDGSSFNLSKYCCCLSTSE 190


>Medtr5g096030.1 | RPM1-interacting protein 4 (RIN4) family protein
           | HC | chr5:41984600-41987102 | 20130731
          Length = 76

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 5/54 (9%)

Query: 181 EKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGGAGNALGTPERPHVIRSQ 234
           +KG  +PKFGEWDV++PASA+G+T IFNK R+E++ G     G PE P    +Q
Sbjct: 2   DKGRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTG-----GKPESPAKANTQ 50


>Medtr8g089560.1 | RPM1-interacting protein 4 (RIN4) family protein
           | HC | chr8:37224822-37225345 | 20130731
          Length = 75

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 31/37 (83%)

Query: 183 GAAVPKFGEWDVSNPASADGFTHIFNKVREERQGGAG 219
           G  +PKFGEWDV++PASA+GFT IFNK R+E++ G G
Sbjct: 8   GRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGG 44


>Medtr3g086160.1 | RPM1-interacting protein 4 (RIN4) family protein
           | HC | chr3:38988227-38988508 | 20130731
          Length = 93

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 40/58 (68%)

Query: 181 EKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGGAGNALGTPERPHVIRSQPSND 238
           + G  +PKFGEWDV++P+SA+GFT IFNK R++++  + +     +R +  R+  +ND
Sbjct: 8   QDGKPLPKFGEWDVNDPSSAEGFTVIFNKARDDKKIASASGRFPSQRRYDSRTGRTND 65


>Medtr5g098260.1 | RPM1-interacting protein 4 (RIN4) family protein
           | HC | chr5:43039189-43038020 | 20130731
          Length = 98

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 28/31 (90%)

Query: 187 PKFGEWDVSNPASADGFTHIFNKVREERQGG 217
           PKFGEWD ++ +SA+G+T IFNK++EE++GG
Sbjct: 4   PKFGEWDANDSSSANGYTVIFNKIKEEKRGG 34