Miyakogusa Predicted Gene

Lj3g3v0730080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0730080.1 tr|B9HZI1|B9HZI1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_568170 PE=4
SV=1,31.08,5e-19,AvrRpt-cleavage,Pathogenic type III effector
avirulence factor Avr cleavage site,CUFF.41225.1
         (250 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:...   169   2e-42
AT5G55850.3 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) f...    59   4e-09
AT5G55850.1 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) f...    57   1e-08
AT5G63270.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    57   1e-08
AT5G55850.2 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) f...    56   2e-08
AT2G04410.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    56   3e-08
AT5G40645.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    54   9e-08
AT2G17660.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    54   1e-07
AT5G48657.2 | Symbols:  | defense protein-related | chr5:1973412...    53   2e-07
AT3G48450.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    49   2e-06
AT4G35655.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    48   6e-06

>AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 |
           chr3:9132458-9133747 FORWARD LENGTH=211
          Length = 211

 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/249 (46%), Positives = 142/249 (57%), Gaps = 42/249 (16%)

Query: 4   RSHVPKFGNWDGEDNVPYTAYFDKARKDRT-GTKMINPNDPEENSDLVLDNNLPPSKSKP 62
           RS+VPKFGNW+ E+NVPYTAYFDKARK R  G+K++NPNDPE NSD    +  PP    P
Sbjct: 3   RSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDS--QSQAPP---HP 57

Query: 63  GVDSEDPSGKGSARSTYESHRSMEDGDPKQFVDSPARQANDSAPRYGGQGVGSADNRKRP 122
                 P    + R + E  RS E+ + KQF D+            GG    +A+  KR 
Sbjct: 58  PSSRTKPEQVDTVRRSREHMRSREESELKQFGDA------------GGSSNEAAN--KRQ 103

Query: 123 SRQSTGSEYSIERSPLHRQAKTPGRDSPSWEGKSSYDSNHGTPGRSRLRPVN-RGDETPE 181
            R S  + Y   +SPLH               K+SYD   GT G+SR +P N R DE+PE
Sbjct: 104 GRASQNNSYD-NKSPLH---------------KNSYD---GT-GKSRPKPTNLRADESPE 143

Query: 182 KGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGGAGNALGTPERPHVIRSQPSNDKVQ 241
           K   VPKFG+WD +NP+SADG+THIFNKVREER  GA N  G+   P    S+  N+   
Sbjct: 144 KVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGA-NVSGSSRTPTHQSSRNPNNTSS 202

Query: 242 CCCFGFSKK 250
           CCCFGF  K
Sbjct: 203 CCCFGFGGK 211


>AT5G55850.3 | Symbols: NOI | RPM1-interacting protein 4 (RIN4)
           family protein | chr5:22603617-22604850 FORWARD
           LENGTH=95
          Length = 95

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 181 EKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQ-GGAGNALGTPERPHVIR-----SQ 234
           +KG  +PKFGEWDV++PASA+GFT IFNK R+E++ GG   + G     HV       S+
Sbjct: 19  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

Query: 235 PSNDKVQCC 243
           P   K  CC
Sbjct: 79  PQPKKWLCC 87


>AT5G55850.1 | Symbols: NOI | RPM1-interacting protein 4 (RIN4)
           family protein | chr5:22603617-22604951 FORWARD
           LENGTH=114
          Length = 114

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 32/37 (86%)

Query: 181 EKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGG 217
           +KG  +PKFGEWDV++PASA+GFT IFNK R+E++ G
Sbjct: 3   DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTG 39


>AT5G63270.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) family
           protein | chr5:25365498-25365949 REVERSE LENGTH=80
          Length = 80

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 5/51 (9%)

Query: 182 KGAAVPKFGEWDVSNPASADGFTHIFNKVREERQ----GGAG-NALGTPER 227
           KG  +PKFGEWDV+NPASA+GFT IF+K  +E++     GAG N+L +P+R
Sbjct: 5   KGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQR 55


>AT5G55850.2 | Symbols: NOI | RPM1-interacting protein 4 (RIN4)
           family protein | chr5:22603617-22604951 FORWARD
           LENGTH=130
          Length = 130

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 32/37 (86%)

Query: 181 EKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGG 217
           +KG  +PKFGEWDV++PASA+GFT IFNK R+E++ G
Sbjct: 19  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTG 55


>AT2G04410.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) family
           protein | chr2:1534012-1535040 REVERSE LENGTH=73
          Length = 73

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 32/37 (86%)

Query: 181 EKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGG 217
           +KG  +PKFGEWDV++P+SA+GFT IFNK R E++GG
Sbjct: 3   DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGG 39


>AT5G40645.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) family
           protein | chr5:16280410-16280883 REVERSE LENGTH=73
          Length = 73

 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 186 VPKFGEWDVSNPASADGFTHIFNKVREERQGGAGNALGTPERPHVIRSQPSNDKVQCCCF 245
           +PKFGEWDV++PASA+GFT IF K R++++  A     +  R +  +SQ    K + CCF
Sbjct: 15  LPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAASQRRDNN-KSQDEPTKKRFCCF 73


>AT2G17660.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) family
           protein | chr2:7673359-7673568 FORWARD LENGTH=69
          Length = 69

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 31/37 (83%)

Query: 181 EKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGG 217
           E G A+PKFGEWDV++PA+ADGFT IF+K  E+++ G
Sbjct: 5   EAGRALPKFGEWDVNDPATADGFTVIFSKAGEDKKTG 41


>AT5G48657.2 | Symbols:  | defense protein-related |
           chr5:19734120-19735516 REVERSE LENGTH=219
          Length = 219

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 103/260 (39%), Gaps = 64/260 (24%)

Query: 1   MAQRSHVPKFGNWDGEDNVPYTAYFDKARKDRTGTKMINPND-PEENSDLVLDNNLPPSK 59
           MA R HVPKFG+W   ++ P+T  F+KA K +    + NPN+ P+ N +   + N+    
Sbjct: 1   MANRPHVPKFGDWT--EDAPFTVVFEKASKSKKNMNVANPNEYPDMNPNAAQNRNM---- 54

Query: 60  SKPGVDSEDPSGKGSARSTYESHRSMEDGDPKQFVDSPARQANDSAPR--------YGGQ 111
           S+P  D + P+     R     H      D  +F  SPA    ++  R        Y  Q
Sbjct: 55  SRP--DQQPPNHNVRPR-----HERFNSRDETEFRPSPAHNERNNRVRSVPPTPETYNHQ 107

Query: 112 GVGSADNRKRPSRQSTGSEYSIERSPLHRQAK--TPGRDSPSWEGKSSYDSNHGTPGRSR 169
             G          +S G+   I R    RQ++   P R   +  G+SS            
Sbjct: 108 TYGGGG-------RSMGNPTEINR----RQSRDHVPARPIRNLRGQSS------------ 144

Query: 170 LRPVNRGDETPEKGAAVPKFGEWDVSNPASADGFTHIFNKVREERQGGA---GNALGTPE 226
                      E+ A +P F      +      +T IF+KV+E+R       G    TP 
Sbjct: 145 -----------ERVATIPPFP--GTGSNMENQSYTLIFDKVKEDRNQARSYNGTDHSTPT 191

Query: 227 RPHVIR-SQPSNDKVQCCCF 245
           RP + +  QP     + CCF
Sbjct: 192 RPIIDQHHQPLPSSPKGCCF 211


>AT3G48450.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) family
           protein | chr3:17944232-17944788 REVERSE LENGTH=89
          Length = 89

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 1/41 (2%)

Query: 186 VPKFGEWDVSNPASADGFTHIFNKVREERQGGAGNALGTPE 226
           +PKFGEWD +NP SA+GFT IFNK R++++     A+  PE
Sbjct: 10  LPKFGEWDATNPGSAEGFTVIFNKARDDKK-TMKTAVAGPE 49


>AT4G35655.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) family
           protein | chr4:16910755-16910961 FORWARD LENGTH=68
          Length = 68

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 28/32 (87%)

Query: 186 VPKFGEWDVSNPASADGFTHIFNKVREERQGG 217
           +PKFGEWDV++PA+A+GFT IF+K  E+++ G
Sbjct: 10  LPKFGEWDVNDPATAEGFTVIFSKAGEDKKTG 41