Miyakogusa Predicted Gene

Lj3g3v0719980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0719980.1 tr|B9GQL6|B9GQL6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_756296 PE=4
SV=1,62.34,1e-17,DNA-binding domain in plant proteins such as,AP2/ERF
domain; seg,NULL; DNA-binding domain,DNA-bindin,CUFF.41213.1
         (234 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13040.1 | Symbols:  | Integrase-type DNA-binding superfamily...   118   4e-27
AT4G13040.3 | Symbols:  | Integrase-type DNA-binding superfamily...   117   6e-27
AT4G13040.2 | Symbols:  | Integrase-type DNA-binding superfamily...   117   7e-27

>AT4G13040.1 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr4:7614100-7615310 FORWARD LENGTH=226
          Length = 226

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 62/92 (67%)

Query: 103 IHNQEPCLMRGVYFKNMKWQAAIKVDKKQIHLGTVASQEEAAHLYDRAAFMCGXXXXXXX 162
           +HNQEPCLMRGVY+KNMKWQAAIKV+KKQIHLGT +SQEEAA LYDRAAFMCG       
Sbjct: 109 VHNQEPCLMRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFEL 168

Query: 163 XXXXXXXXXXXXXXXXLAMTRQAITSKKHKGR 194
                           L  TR+ IT+KK K R
Sbjct: 169 SEEVIRELKQQSWEEFLNCTRRTITNKKPKSR 200


>AT4G13040.3 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr4:7613720-7615310 FORWARD LENGTH=246
          Length = 246

 Score =  117 bits (294), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 62/92 (67%)

Query: 103 IHNQEPCLMRGVYFKNMKWQAAIKVDKKQIHLGTVASQEEAAHLYDRAAFMCGXXXXXXX 162
           +HNQEPCLMRGVY+KNMKWQAAIKV+KKQIHLGT +SQEEAA LYDRAAFMCG       
Sbjct: 129 VHNQEPCLMRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFEL 188

Query: 163 XXXXXXXXXXXXXXXXLAMTRQAITSKKHKGR 194
                           L  TR+ IT+KK K R
Sbjct: 189 SEEVIRELKQQSWEEFLNCTRRTITNKKPKSR 220


>AT4G13040.2 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr4:7614292-7615310 FORWARD LENGTH=170
          Length = 170

 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 62/92 (67%)

Query: 103 IHNQEPCLMRGVYFKNMKWQAAIKVDKKQIHLGTVASQEEAAHLYDRAAFMCGXXXXXXX 162
           +HNQEPCLMRGVY+KNMKWQAAIKV+KKQIHLGT +SQEEAA LYDRAAFMCG       
Sbjct: 53  VHNQEPCLMRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFEL 112

Query: 163 XXXXXXXXXXXXXXXXLAMTRQAITSKKHKGR 194
                           L  TR+ IT+KK K R
Sbjct: 113 SEEVIRELKQQSWEEFLNCTRRTITNKKPKSR 144