Miyakogusa Predicted Gene

Lj3g3v0669000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0669000.1 Non Characterized Hit- tr|Q8GYA5|Q8GYA5_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At3,64.79,4e-17,seg,NULL,CUFF.41078.1
         (103 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g080030.1 | hypothetical protein | HC | chr2:33772819-3377...   114   2e-26

>Medtr2g080030.1 | hypothetical protein | HC |
           chr2:33772819-33773857 | 20130731
          Length = 110

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 65/96 (67%), Gaps = 4/96 (4%)

Query: 8   ELPPKASISGHKMGEGHNGGYLPMSHRFRPACKCSNRPGSVRCARHGYVVPGERMKKRVA 67
           +LPPK S SG    +  N GY+ MS RFRPAC C NRPGSVRCARHGYVVPGER+KKR+A
Sbjct: 18  QLPPKMSFSG----QNKNEGYMSMSQRFRPACTCLNRPGSVRCARHGYVVPGERLKKRLA 73

Query: 68  SKEIXXXXXXXXXXXXXXXXXNFKPTPSRLSNMSMA 103
           SKEI                 NFKPTPSRLS MSMA
Sbjct: 74  SKEILRRALTPPPKRLGLRWLNFKPTPSRLSIMSMA 109