Miyakogusa Predicted Gene

Lj3g3v0669000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0669000.1 Non Chatacterized Hit- tr|Q8GYA5|Q8GYA5_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At3,64.79,4e-17,seg,NULL,CUFF.41078.1
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15518.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    59   9e-10

>AT3G15518.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr3:5249221-5249541 FORWARD LENGTH=106
          Length = 106

 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 34  RFRPACKCSNRPGSVRCARHGYVVP-GERMKKRVA--SKEIXXXXXXXXXXXXXXXXXNF 90
           R R AC CS RPGS +CARHG+VVP  ER+ ++ +  S+E+                 NF
Sbjct: 34  RVRVACTCSGRPGSTKCARHGFVVPSDERLMRKASDGSREVLRRALTPPIRRMNLRWLNF 93

Query: 91  KPTPSRLSNMS 101
           +PTPSRL  MS
Sbjct: 94  RPTPSRLCKMS 104