Miyakogusa Predicted Gene
- Lj3g3v0463680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0463680.1 tr|G7JJK5|G7JJK5_MEDTR RING finger protein
OS=Medicago truncatula GN=MTR_4g029440 PE=4
SV=1,62.86,0.15,zf-C3HC4_2,NULL; seg,NULL; Ring finger,Zinc finger,
RING-type; RNF5,NULL; ZF_RING_2,Zinc finger, RIN,CUFF.40853.1
(402 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g029440.2 | zinc finger, C3HC4 type (RING finger) protein ... 357 8e-99
Medtr4g029440.1 | zinc finger, C3HC4 type (RING finger) protein ... 355 5e-98
Medtr2g061230.1 | zinc finger, C3HC4 type (RING finger) protein ... 169 5e-42
Medtr7g093390.2 | zinc finger, C3HC4 type (RING finger) protein ... 159 4e-39
Medtr7g093390.3 | zinc finger, C3HC4 type (RING finger) protein ... 159 4e-39
Medtr7g093390.1 | zinc finger, C3HC4 type (RING finger) protein ... 159 4e-39
Medtr7g093390.4 | zinc finger, C3HC4 type (RING finger) protein ... 159 4e-39
Medtr1g054280.1 | zinc finger, C3HC4 type (RING finger) protein ... 114 1e-25
Medtr1g054260.1 | zinc finger, C3HC4 type (RING finger) protein ... 106 4e-23
Medtr1g054210.1 | zinc finger, C3HC4 type (RING finger) protein ... 105 9e-23
Medtr1g021895.1 | zinc finger, C3HC4 type (RING finger) protein ... 103 3e-22
Medtr1g021895.2 | zinc finger, C3HC4 type (RING finger) protein ... 103 3e-22
Medtr5g019300.1 | zinc finger, C3HC4 type (RING finger) protein ... 102 8e-22
Medtr2g090330.3 | zinc finger, C3HC4 type (RING finger) protein ... 101 1e-21
Medtr2g090330.1 | zinc finger, C3HC4 type (RING finger) protein ... 101 2e-21
Medtr2g090330.2 | zinc finger, C3HC4 type (RING finger) protein ... 101 2e-21
Medtr1g054465.1 | zinc finger, C3HC4 type (RING finger) protein ... 100 3e-21
Medtr2g090325.1 | zinc finger, C3HC4 type (RING finger) protein ... 99 6e-21
Medtr2g090295.1 | E3 ubiquitin-protein ligase RMA1H1-like protei... 93 5e-19
Medtr8g465910.1 | E3 ubiquitin-protein ligase RMA1H1-like protei... 87 2e-17
Medtr4g088875.1 | E3 ubiquitin-protein ligase RMA1H1-like protei... 86 5e-17
Medtr4g088870.1 | E3 ubiquitin-protein ligase RMA1H1-like protei... 85 2e-16
Medtr2g013550.2 | E3 ubiquitin-protein ligase RMA1H1-like protei... 83 4e-16
Medtr2g013550.1 | E3 ubiquitin-protein ligase RMA1H1-like protei... 83 4e-16
Medtr2g013550.3 | E3 ubiquitin-protein ligase RMA1H1-like protei... 83 4e-16
Medtr7g089190.1 | DNA/RNA helicase | HC | chr7:34885684-34881166... 52 9e-07
Medtr1g015390.1 | peroxisome biogenesis factor 10 | HC | chr1:38... 51 2e-06
>Medtr4g029440.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr4:10176191-10172035 | 20130731
Length = 425
Score = 357 bits (917), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 213/394 (54%), Positives = 253/394 (64%), Gaps = 15/394 (3%)
Query: 1 MEPLD-PTYTSGVELGS---STESAHVHIEDHFRHLEAVTSRARQRLRLTPVHSPIQITN 56
MEPLD T TS S ESA +I + HLEA+TSRARQR L P S IQ+TN
Sbjct: 1 MEPLDHQTSTSAGSFDSMLEELESAEENIRNRIIHLEAITSRARQRRGLPPSSSRIQVTN 60
Query: 57 FSGEATTIADVPXXXXXX----XXXXXXXXXXXXXXKRSGADLIAKALGLEEPGASKGGS 112
GE T DV KR + LIAKALG+EE K
Sbjct: 61 VIGETATAGDVQGEERREERNDAGQEEGIVESVKGGKRKSSHLIAKALGMEEIDNGKVEE 120
Query: 113 STGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEADLVPI 172
S+GNFFDCNICL++ARDPVLTCCGHLFCWPCFY+LSYAYS A+ECPVC GEVTE+ ++PI
Sbjct: 121 SSGNFFDCNICLDIARDPVLTCCGHLFCWPCFYQLSYAYSKAKECPVCKGEVTESGIIPI 180
Query: 173 YGKSSSSGDHRLELEEAGLSIPPRPMAQRVDGIRQQLVRQGA-SSSIVRHILQFHNLFG- 230
YG + GD ++E++EAGL +PPRP A RV+ IRQ+L+ QGA SSSIV+ I +F N G
Sbjct: 181 YGHGNGGGDCQMEMKEAGLRVPPRPKAPRVESIRQKLLTQGASSSSIVQSIRRFQNRIGG 240
Query: 231 -GERVQSESPNTAATDRNNVSRIQSQPQTDNNQHPDSNPISRLLVQRAASFSSISSRLNS 289
GE+VQ ESP + DRNN +QS+ QTDNN+H S +SRLL Q A+SFSS+SS LNS
Sbjct: 241 FGEQVQLESPTSTTPDRNNGLPVQSRTQTDNNEHGGSQQVSRLLEQGASSFSSLSSALNS 300
Query: 290 AMDSAERLVQDLESYIHRDHTGESRQLNPPDADRNPTFSATATNRSESLTQDXX-XXXXX 348
AMDSAERLVQDLESYI+ +TG SR+ NPP RN T ATN+SES +D
Sbjct: 301 AMDSAERLVQDLESYINGHNTGGSREQNPPAVTRNSTLGVAATNQSESRARDVDLTNSVA 360
Query: 349 XXXXXXPIS---SNVDTVAVIDSGIQTTDDNVQI 379
P+S NVD VAV S I TTD NVQ+
Sbjct: 361 AAASVSPLSRNVDNVDNVAVTGSQIHTTDRNVQV 394
>Medtr4g029440.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr4:10176191-10172035 | 20130731
Length = 431
Score = 355 bits (910), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 212/393 (53%), Positives = 252/393 (64%), Gaps = 15/393 (3%)
Query: 2 EPLD-PTYTSGVELGS---STESAHVHIEDHFRHLEAVTSRARQRLRLTPVHSPIQITNF 57
EPLD T TS S ESA +I + HLEA+TSRARQR L P S IQ+TN
Sbjct: 8 EPLDHQTSTSAGSFDSMLEELESAEENIRNRIIHLEAITSRARQRRGLPPSSSRIQVTNV 67
Query: 58 SGEATTIADVPXXXXXXXXXXXXXXX----XXXXXKRSGADLIAKALGLEEPGASKGGSS 113
GE T DV KR + LIAKALG+EE K S
Sbjct: 68 IGETATAGDVQGEERREERNDAGQEEGIVESVKGGKRKSSHLIAKALGMEEIDNGKVEES 127
Query: 114 TGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEADLVPIY 173
+GNFFDCNICL++ARDPVLTCCGHLFCWPCFY+LSYAYS A+ECPVC GEVTE+ ++PIY
Sbjct: 128 SGNFFDCNICLDIARDPVLTCCGHLFCWPCFYQLSYAYSKAKECPVCKGEVTESGIIPIY 187
Query: 174 GKSSSSGDHRLELEEAGLSIPPRPMAQRVDGIRQQLVRQGA-SSSIVRHILQFHNLFG-- 230
G + GD ++E++EAGL +PPRP A RV+ IRQ+L+ QGA SSSIV+ I +F N G
Sbjct: 188 GHGNGGGDCQMEMKEAGLRVPPRPKAPRVESIRQKLLTQGASSSSIVQSIRRFQNRIGGF 247
Query: 231 GERVQSESPNTAATDRNNVSRIQSQPQTDNNQHPDSNPISRLLVQRAASFSSISSRLNSA 290
GE+VQ ESP + DRNN +QS+ QTDNN+H S +SRLL Q A+SFSS+SS LNSA
Sbjct: 248 GEQVQLESPTSTTPDRNNGLPVQSRTQTDNNEHGGSQQVSRLLEQGASSFSSLSSALNSA 307
Query: 291 MDSAERLVQDLESYIHRDHTGESRQLNPPDADRNPTFSATATNRSESLTQDXX-XXXXXX 349
MDSAERLVQDLESYI+ +TG SR+ NPP RN T ATN+SES +D
Sbjct: 308 MDSAERLVQDLESYINGHNTGGSREQNPPAVTRNSTLGVAATNQSESRARDVDLTNSVAA 367
Query: 350 XXXXXPIS---SNVDTVAVIDSGIQTTDDNVQI 379
P+S NVD VAV S I TTD NVQ+
Sbjct: 368 AASVSPLSRNVDNVDNVAVTGSQIHTTDRNVQV 400
>Medtr2g061230.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:25954060-25951976 | 20130731
Length = 237
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 118/210 (56%), Gaps = 7/210 (3%)
Query: 25 IEDHFRHLEAVTSRARQRLRLTPVHSPIQITNFSGEATTIADV---PXXXXXXXXXXXXX 81
IE+ + +EA+ +A+Q + H+PIQITNF GE T D
Sbjct: 13 IEEQMKRIEAIF-KAKQNQKWQQCHNPIQITNFDGEQLTKTDNVEDDESWMTMEEVEGAT 71
Query: 82 XXXXXXXKRSGADLIAKALGLEEPGASKGGSSTGNFFDCNICLEMARDPVLTCCGHLFCW 141
KR L+A ALG+ GG T NFFDCNICL+ A +PVLTCCGHLFCW
Sbjct: 72 LECKKTCKRKAPCLVANALGMVTSANGVGGR-TRNFFDCNICLDTANNPVLTCCGHLFCW 130
Query: 142 PCFYKLSYAYSNARECPVCNGEVTEADLVPIYGKSSSSGDHRLELEEAGLSIPPRPMAQR 201
CFY+L+YAYSNA+ECPVC GEV + D++P+YG RLEL+E L +P RP A R
Sbjct: 131 ECFYQLAYAYSNAKECPVCEGEVLDTDIIPVYGNGMIDDISRLELKETCLRVPDRPHAPR 190
Query: 202 VDGIRQQLVRQGASSSIVRHILQFHNLFGG 231
V+ RQ+ R+ +S+ L FGG
Sbjct: 191 VESTRQRRRRRTVAST--NQDLSLFGNFGG 218
>Medtr7g093390.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:37118841-37122307 | 20130731
Length = 453
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 135/252 (53%), Gaps = 36/252 (14%)
Query: 109 KGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEAD 168
K G G+FFDCNICL++A++PVLTCCGHLFCW C Y+ + +S+ARECPVC GEVT
Sbjct: 161 KAGGGDGDFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDARECPVCKGEVTIKS 220
Query: 169 LVPIYGKSSSSGDHRLELEEAGLSIPPRPMAQRVDGIRQQLVRQGASSSIVRHILQFHNL 228
+ PIYG+ +S+ R+ E++ L IPPRP A+RV+ +RQ L R + + I + N
Sbjct: 221 VTPIYGRGNST---RVLEEDSTLKIPPRPQAKRVESLRQTLQRNAFAFPVEEMIRRLGNR 277
Query: 229 FGGERVQSESPNTAATDRNNVSRIQSQ-----------------PQTDN----NQHPDSN 267
R S+ PN R R S P D+ NQ+ D+
Sbjct: 278 IDLARDLSQ-PNEPENARGTAERTTSLLSRFLTSRGMRREQNPVPPPDDAASLNQNNDTG 336
Query: 268 P--------ISRLLVQRAASFSSISSRLNSAMDSAERLVQDLESYIHRDHTGESRQLNPP 319
+ LL++R+ S + S L+SA+ SAERLV E+Y + G +++ PP
Sbjct: 337 AELGGDTRRVQSLLLRRSQSHRATLSTLSSALTSAERLV---EAYFRSNPLGRNQEQPPP 393
Query: 320 DADRNPTFSATA 331
D +FS+ A
Sbjct: 394 SGDDRDSFSSIA 405
>Medtr7g093390.3 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:37118841-37121989 | 20130731
Length = 453
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 135/252 (53%), Gaps = 36/252 (14%)
Query: 109 KGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEAD 168
K G G+FFDCNICL++A++PVLTCCGHLFCW C Y+ + +S+ARECPVC GEVT
Sbjct: 161 KAGGGDGDFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDARECPVCKGEVTIKS 220
Query: 169 LVPIYGKSSSSGDHRLELEEAGLSIPPRPMAQRVDGIRQQLVRQGASSSIVRHILQFHNL 228
+ PIYG+ +S+ R+ E++ L IPPRP A+RV+ +RQ L R + + I + N
Sbjct: 221 VTPIYGRGNST---RVLEEDSTLKIPPRPQAKRVESLRQTLQRNAFAFPVEEMIRRLGNR 277
Query: 229 FGGERVQSESPNTAATDRNNVSRIQSQ-----------------PQTDN----NQHPDSN 267
R S+ PN R R S P D+ NQ+ D+
Sbjct: 278 IDLARDLSQ-PNEPENARGTAERTTSLLSRFLTSRGMRREQNPVPPPDDAASLNQNNDTG 336
Query: 268 P--------ISRLLVQRAASFSSISSRLNSAMDSAERLVQDLESYIHRDHTGESRQLNPP 319
+ LL++R+ S + S L+SA+ SAERLV E+Y + G +++ PP
Sbjct: 337 AELGGDTRRVQSLLLRRSQSHRATLSTLSSALTSAERLV---EAYFRSNPLGRNQEQPPP 393
Query: 320 DADRNPTFSATA 331
D +FS+ A
Sbjct: 394 SGDDRDSFSSIA 405
>Medtr7g093390.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:37118817-37121936 | 20130731
Length = 453
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 135/252 (53%), Gaps = 36/252 (14%)
Query: 109 KGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEAD 168
K G G+FFDCNICL++A++PVLTCCGHLFCW C Y+ + +S+ARECPVC GEVT
Sbjct: 161 KAGGGDGDFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDARECPVCKGEVTIKS 220
Query: 169 LVPIYGKSSSSGDHRLELEEAGLSIPPRPMAQRVDGIRQQLVRQGASSSIVRHILQFHNL 228
+ PIYG+ +S+ R+ E++ L IPPRP A+RV+ +RQ L R + + I + N
Sbjct: 221 VTPIYGRGNST---RVLEEDSTLKIPPRPQAKRVESLRQTLQRNAFAFPVEEMIRRLGNR 277
Query: 229 FGGERVQSESPNTAATDRNNVSRIQSQ-----------------PQTDN----NQHPDSN 267
R S+ PN R R S P D+ NQ+ D+
Sbjct: 278 IDLARDLSQ-PNEPENARGTAERTTSLLSRFLTSRGMRREQNPVPPPDDAASLNQNNDTG 336
Query: 268 P--------ISRLLVQRAASFSSISSRLNSAMDSAERLVQDLESYIHRDHTGESRQLNPP 319
+ LL++R+ S + S L+SA+ SAERLV E+Y + G +++ PP
Sbjct: 337 AELGGDTRRVQSLLLRRSQSHRATLSTLSSALTSAERLV---EAYFRSNPLGRNQEQPPP 393
Query: 320 DADRNPTFSATA 331
D +FS+ A
Sbjct: 394 SGDDRDSFSSIA 405
>Medtr7g093390.4 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr7:37118817-37122307 | 20130731
Length = 453
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 135/252 (53%), Gaps = 36/252 (14%)
Query: 109 KGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEAD 168
K G G+FFDCNICL++A++PVLTCCGHLFCW C Y+ + +S+ARECPVC GEVT
Sbjct: 161 KAGGGDGDFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDARECPVCKGEVTIKS 220
Query: 169 LVPIYGKSSSSGDHRLELEEAGLSIPPRPMAQRVDGIRQQLVRQGASSSIVRHILQFHNL 228
+ PIYG+ +S+ R+ E++ L IPPRP A+RV+ +RQ L R + + I + N
Sbjct: 221 VTPIYGRGNST---RVLEEDSTLKIPPRPQAKRVESLRQTLQRNAFAFPVEEMIRRLGNR 277
Query: 229 FGGERVQSESPNTAATDRNNVSRIQSQ-----------------PQTDN----NQHPDSN 267
R S+ PN R R S P D+ NQ+ D+
Sbjct: 278 IDLARDLSQ-PNEPENARGTAERTTSLLSRFLTSRGMRREQNPVPPPDDAASLNQNNDTG 336
Query: 268 P--------ISRLLVQRAASFSSISSRLNSAMDSAERLVQDLESYIHRDHTGESRQLNPP 319
+ LL++R+ S + S L+SA+ SAERLV E+Y + G +++ PP
Sbjct: 337 AELGGDTRRVQSLLLRRSQSHRATLSTLSSALTSAERLV---EAYFRSNPLGRNQEQPPP 393
Query: 320 DADRNPTFSATA 331
D +FS+ A
Sbjct: 394 SGDDRDSFSSIA 405
>Medtr1g054280.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr1:23323943-23324740 | 20130731
Length = 265
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 70/104 (67%), Gaps = 2/104 (1%)
Query: 109 KGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYK-LSYAYSNARECPVCNGEVTEA 167
KGG S G+ FDCNICL++A++PV+TCCGHLFCWPC Y+ L S + CPVC GEVT+
Sbjct: 67 KGGGSEGSVFDCNICLDLAKNPVVTCCGHLFCWPCLYRWLHLRSSQTKACPVCKGEVTDK 126
Query: 168 DLVPIYGKSSSSGDHRLELEEAGLSIPPRPMAQRVDGIRQQLVR 211
+++PIYG ++ + R E + L IP RP A+ V Q ++
Sbjct: 127 NVIPIYGGENNV-EVRHEDSSSTLQIPSRPKARHVSNDSSQTIQ 169
>Medtr1g054260.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr1:23305014-23305622 | 20130731
Length = 202
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 62/95 (65%), Gaps = 9/95 (9%)
Query: 117 FFDCNICLEMARDPVLTCCGHLFCWPCFYK-------LSYAYSN-ARECPVCNGEVTEAD 168
F+DCNIC +A+DPVLTCCGHLFCWPC Y+ LS+ S+ A+ECPVC GEVT+
Sbjct: 86 FYDCNICFVLAKDPVLTCCGHLFCWPCLYRWLNTKSPLSFTRSSLAKECPVCKGEVTDKT 145
Query: 169 LVPIYGKSSSSGDHRLE-LEEAGLSIPPRPMAQRV 202
+ PIYG + R E L IPPRP A+RV
Sbjct: 146 VTPIYGGGNDVEVVRAEDSSSTTLQIPPRPNARRV 180
>Medtr1g054210.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr1:23234618-23235307 | 20130731
Length = 229
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 73/121 (60%), Gaps = 9/121 (7%)
Query: 110 GGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKL--SYAYSNARECPVCNGEVTEA 167
G S G F+DCNICL +A+DPV+T CGHLFCWPC Y+ S +Y N +ECPVC GEV +
Sbjct: 114 GCGSKGGFYDCNICLGLAKDPVVTRCGHLFCWPCLYRWLHSGSYGN-KECPVCKGEVKDK 172
Query: 168 DLVPIYGKSSSSGDHRLELEEAG--LSIPPRPMAQRVDGIRQQLVRQGASSSIVRHILQF 225
++PIYG D + E++ L IP RP A+R D +Q R+G + R I+
Sbjct: 173 KVIPIYG---GGNDVEVGHEDSSSTLQIPRRPNARRKDSNARQ-SREGRVRHLGRDIMTI 228
Query: 226 H 226
Sbjct: 229 Q 229
>Medtr1g021895.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr1:6660200-6658417 | 20130731
Length = 232
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 118 FDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEADLVPIYGKSS 177
F+CNIC ++A+DP++T CGHLFCWPC YK + +S +RECPVC + E LVP+YG+
Sbjct: 30 FECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAMIEEEKLVPLYGRGK 89
Query: 178 SSGDHRLELEEAGLSIPPRPMAQR 201
+S D R + G++IP RP QR
Sbjct: 90 TSTDPRSK-SVPGVNIPHRPAGQR 112
>Medtr1g021895.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr1:6660432-6658324 | 20130731
Length = 232
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 118 FDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEADLVPIYGKSS 177
F+CNIC ++A+DP++T CGHLFCWPC YK + +S +RECPVC + E LVP+YG+
Sbjct: 30 FECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAMIEEEKLVPLYGRGK 89
Query: 178 SSGDHRLELEEAGLSIPPRPMAQR 201
+S D R + G++IP RP QR
Sbjct: 90 TSTDPRSK-SVPGVNIPHRPAGQR 112
>Medtr5g019300.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr5:7292943-7291465 | 20130731
Length = 239
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 118 FDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEADLVPIYGKSS 177
F+CNIC ++A+DPV+T CGHLFCWPC Y+ + +S+++ECPVC V E LVP+YG+
Sbjct: 35 FECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGK 94
Query: 178 SSGDHRLELEEAGLSIPPRPMAQR 201
+ D R + G+ IP RP QR
Sbjct: 95 TQTDPRTK-SYPGMEIPRRPSGQR 117
>Medtr2g090330.3 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:38426674-38424779 | 20130731
Length = 166
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 116 NFFDCNICLEMARDPVLTCCGHLFCWPCFYKL----SYAYSNARECPVCNGEVTEADLVP 171
N F+CNICLE +DPV+T CGHL+CWPC YK S+ ++ ECP+C E++E+ LVP
Sbjct: 31 NDFECNICLEHVKDPVVTLCGHLYCWPCIYKWINSTSWEHNEKPECPICKSEISESTLVP 90
Query: 172 IYGKSSSSGDHRLELEEAGLSIPPRPMAQR 201
+YG+ ++ E + G+ +PPRP+ R
Sbjct: 91 LYGRGKTTSSSEGEAHQDGVVVPPRPLGPR 120
>Medtr2g090330.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:38425346-38424779 | 20130731
Length = 163
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 116 NFFDCNICLEMARDPVLTCCGHLFCWPCFYKL----SYAYSNARECPVCNGEVTEADLVP 171
N F+CNICLE +DPV+T CGHL+CWPC YK S+ ++ ECP+C E++E+ LVP
Sbjct: 28 NDFECNICLEHVKDPVVTLCGHLYCWPCIYKWINSTSWEHNEKPECPICKSEISESTLVP 87
Query: 172 IYGKSSSSGDHRLELEEAGLSIPPRPMAQR 201
+YG+ ++ E + G+ +PPRP+ R
Sbjct: 88 LYGRGKTTSSSEGEAHQDGVVVPPRPLGPR 117
>Medtr2g090330.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:38426674-38424779 | 20130731
Length = 163
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 116 NFFDCNICLEMARDPVLTCCGHLFCWPCFYKL----SYAYSNARECPVCNGEVTEADLVP 171
N F+CNICLE +DPV+T CGHL+CWPC YK S+ ++ ECP+C E++E+ LVP
Sbjct: 28 NDFECNICLEHVKDPVVTLCGHLYCWPCIYKWINSTSWEHNEKPECPICKSEISESTLVP 87
Query: 172 IYGKSSSSGDHRLELEEAGLSIPPRPMAQR 201
+YG+ ++ E + G+ +PPRP+ R
Sbjct: 88 LYGRGKTTSSSEGEAHQDGVVVPPRPLGPR 117
>Medtr1g054465.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr1:23552590-23553177 | 20130731
Length = 195
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 63/97 (64%), Gaps = 19/97 (19%)
Query: 117 FFDCNICLEMARDPVLTCCGHLFCWPCFYK-------LSYAYSN-ARECPVCNGEVTEAD 168
F+DCNIC ++A++PVLTCCGHLFCWPC Y+ LS+ S+ A+ECPVC GEVT+
Sbjct: 54 FYDCNICFDLAKEPVLTCCGHLFCWPCLYRWLNTKSPLSFRRSSLAKECPVCKGEVTDKT 113
Query: 169 LVPIYGKSSSSGDHRLELEEA------GLSIPPRPMA 199
+ PIYG G + +E+ A L IPPRP A
Sbjct: 114 VTPIYG-----GGNEVEVVRAEDSSSTTLQIPPRPNA 145
>Medtr2g090325.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr2:38420153-38419551 | 20130731
Length = 200
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 19/191 (9%)
Query: 118 FDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEADLVPIYGKSS 177
FDCNICLE +DPV+T CGHL+CWPC YK + +CPVC E++E+ LVP+YG+
Sbjct: 18 FDCNICLENVQDPVVTLCGHLYCWPCIYKWLNTRNEKSQCPVCKLEISESTLVPLYGRGK 77
Query: 178 SSGDHRLELEEAGLSIPPRPMAQRVDGIRQQLVRQGASSSIVRHILQFHNLFGGERVQSE 237
++ + G+ +PPRP+ + + ++++ R Q E ++
Sbjct: 78 TTSTSK------GIVVPPRPLGPSSWLGKLSPRSRDNTATVSRPSRQLREQLTPE-IRPR 130
Query: 238 SPNTAATDR-NNVSRIQSQPQTDNNQHPDSNPISRLLVQRAASFSSISSRLNSAMDSAER 296
S +TA R + R QS P+ P+ +P + S+ RL ++ E
Sbjct: 131 SHDTATVSRPSRRMREQSAPEVSPWDIPERDP-----------WFSLDDRLERWLEGLED 179
Query: 297 LVQDLESYIHR 307
+++ + + R
Sbjct: 180 MMEQMRPSVRR 190
>Medtr2g090295.1 | E3 ubiquitin-protein ligase RMA1H1-like protein |
HC | chr2:38396296-38393419 | 20130731
Length = 247
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 7/89 (7%)
Query: 118 FDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARE-------CPVCNGEVTEADLV 170
FDCNICLE +DPV+T CGHL+CWPC YK ++ +E CPVC E++++ LV
Sbjct: 40 FDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHAENQEKQKEEPQCPVCKSEISKSSLV 99
Query: 171 PIYGKSSSSGDHRLELEEAGLSIPPRPMA 199
P+YG+ ++ + + G IPPRP+
Sbjct: 100 PLYGRGQTTPPSKGNDHQIGSVIPPRPLG 128
>Medtr8g465910.1 | E3 ubiquitin-protein ligase RMA1H1-like protein |
HC | chr8:23517772-23514789 | 20130731
Length = 244
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Query: 118 FDCNICLEMARDPVLTCCGHLFCWPCFYKL--------SYAYSNARECPVCNGEVTEADL 169
FDCNICL+ +DPV+T CGHL+CWPC YK S +CPVC E++++ L
Sbjct: 44 FDCNICLDCVQDPVVTFCGHLYCWPCIYKWLDIQSGISSENEKQKPQCPVCKSELSQSSL 103
Query: 170 VPIYGKSSSSGDHRLELEEAGLSIPPRPMAQR 201
VP+YG+ + + ++ G+ +P RP R
Sbjct: 104 VPLYGRGQTMTLSEGKAQQVGIVVPRRPTGPR 135
>Medtr4g088875.1 | E3 ubiquitin-protein ligase RMA1H1-like protein |
HC | chr4:35472873-35474936 | 20130731
Length = 231
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 17/133 (12%)
Query: 118 FDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNAR------ECPVCNGEVTEADLVP 171
FDCNICL+ A +PV+T CGHL+CW C YK + S + +CPVC ++ +VP
Sbjct: 31 FDCNICLDFAHEPVVTLCGHLYCWSCIYKWLFVQSASLAPDEPPQCPVCKDGISHTKMVP 90
Query: 172 IYGKSSS------SGDHRLELEEAGLSIPPRPMAQRVDGIRQQLVRQGASSSIVRHILQF 225
+YG+ + D + LE+ +SIPPRP A GI+ L + + R L +
Sbjct: 91 LYGRGQTLSRCDRDSDAKPTLED--ISIPPRPPA---SGIQSLLAMATSPQNGSRQQLPY 145
Query: 226 HNLFGGERVQSES 238
N + + + S +
Sbjct: 146 RNPYQTQHINSST 158
>Medtr4g088870.1 | E3 ubiquitin-protein ligase RMA1H1-like protein |
HC | chr4:35466967-35468099 | 20130731
Length = 199
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Query: 116 NFFDCNICLEMARDPVLTCCGHLFCWPCFYKL------SYAYSNARECPVCNGEVTEADL 169
N FDC+ICL+ A +PV+T CGHLFCW C YK S A +CPVC +++ +
Sbjct: 30 NCFDCHICLDFAHEPVVTLCGHLFCWSCIYKWLFVQRASLAPDEHPQCPVCKHDISHTKM 89
Query: 170 VPIYGKSSSSGDHRLELEEAGL---SIPPRPMAQRVDGIRQ 207
VP+YG+ + R +A L SIPPRP A + + +
Sbjct: 90 VPLYGRGQTLSSRRGRNRKATLEDISIPPRPPASEIQSLLE 130
>Medtr2g013550.2 | E3 ubiquitin-protein ligase RMA1H1-like protein |
HC | chr2:3664172-3662157 | 20130731
Length = 236
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 20/134 (14%)
Query: 116 NFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNAR-------ECPVCNGEVTEAD 168
N FDCNICL+ A +PV+T CGHL+CWPC YK + S+ +CPVC ++
Sbjct: 25 NGFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSDDSLGSDEHPQCPVCKENISHTT 84
Query: 169 LVPIYGKSSSSGDHRLELEEAGLS----IPPRPMAQRVDGIRQQLVRQGASSSIVRHILQ 224
+VP+YG+ G H ++ +PPRP A Q + AS S L
Sbjct: 85 MVPLYGR----GGHTPPSGKSSCCDDNFVPPRPTASGA-----QALLATASQSDQHQRLP 135
Query: 225 FHNLFGGERVQSES 238
+ N + G+ + S S
Sbjct: 136 YRNPYQGQYLNSSS 149
>Medtr2g013550.1 | E3 ubiquitin-protein ligase RMA1H1-like protein |
HC | chr2:3664296-3662157 | 20130731
Length = 236
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 20/134 (14%)
Query: 116 NFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNAR-------ECPVCNGEVTEAD 168
N FDCNICL+ A +PV+T CGHL+CWPC YK + S+ +CPVC ++
Sbjct: 25 NGFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSDDSLGSDEHPQCPVCKENISHTT 84
Query: 169 LVPIYGKSSSSGDHRLELEEAGLS----IPPRPMAQRVDGIRQQLVRQGASSSIVRHILQ 224
+VP+YG+ G H ++ +PPRP A Q + AS S L
Sbjct: 85 MVPLYGR----GGHTPPSGKSSCCDDNFVPPRPTASGA-----QALLATASQSDQHQRLP 135
Query: 225 FHNLFGGERVQSES 238
+ N + G+ + S S
Sbjct: 136 YRNPYQGQYLNSSS 149
>Medtr2g013550.3 | E3 ubiquitin-protein ligase RMA1H1-like protein |
HC | chr2:3664165-3662157 | 20130731
Length = 236
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 20/134 (14%)
Query: 116 NFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNAR-------ECPVCNGEVTEAD 168
N FDCNICL+ A +PV+T CGHL+CWPC YK + S+ +CPVC ++
Sbjct: 25 NGFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSDDSLGSDEHPQCPVCKENISHTT 84
Query: 169 LVPIYGKSSSSGDHRLELEEAGLS----IPPRPMAQRVDGIRQQLVRQGASSSIVRHILQ 224
+VP+YG+ G H ++ +PPRP A Q + AS S L
Sbjct: 85 MVPLYGR----GGHTPPSGKSSCCDDNFVPPRPTASGA-----QALLATASQSDQHQRLP 135
Query: 225 FHNLFGGERVQSES 238
+ N + G+ + S S
Sbjct: 136 YRNPYQGQYLNSSS 149
>Medtr7g089190.1 | DNA/RNA helicase | HC | chr7:34885684-34881166 |
20130731
Length = 822
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 115 GNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEADL 169
G FDC ICL D V+TCC H+FC C K + SN+ CP+C ++E +L
Sbjct: 568 GEDFDCPICLSPPTDIVITCCAHIFCRECILK-TLQRSNS-SCPLCRRSLSETEL 620
>Medtr1g015390.1 | peroxisome biogenesis factor 10 | HC |
chr1:3820269-3810303 | 20130731
Length = 420
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 102 LEEPGASKG----GSS------TGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAY 151
L P A KG GSS T C +CL + P T CGH+FCW C + +
Sbjct: 338 LASPEADKGSWVPGSSSSEHNATNGVSKCTLCLSNRQHPTATSCGHVFCWNCITE----W 393
Query: 152 SNAR-ECPVCNGEVTEADLVPIY 173
N + ECP+C +T + LV +Y
Sbjct: 394 CNEKPECPLCRTPITHSSLVCVY 416