Miyakogusa Predicted Gene

Lj3g3v0463680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0463680.1 tr|G7JJK5|G7JJK5_MEDTR RING finger protein
OS=Medicago truncatula GN=MTR_4g029440 PE=4
SV=1,62.86,0.15,zf-C3HC4_2,NULL; seg,NULL; Ring finger,Zinc finger,
RING-type; RNF5,NULL; ZF_RING_2,Zinc finger, RIN,CUFF.40853.1
         (402 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44410.1 | Symbols:  | RING/U-box superfamily protein | chr2:...   157   2e-38
AT3G58030.4 | Symbols:  | RING/U-box superfamily protein | chr3:...   129   3e-30
AT3G58030.3 | Symbols:  | RING/U-box superfamily protein | chr3:...   129   3e-30
AT3G58030.2 | Symbols:  | RING/U-box superfamily protein | chr3:...   129   3e-30
AT3G58030.1 | Symbols:  | RING/U-box superfamily protein | chr3:...   129   3e-30
AT2G42030.1 | Symbols:  | RING/U-box superfamily protein | chr2:...   111   7e-25
AT1G74990.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   107   2e-23
AT1G19310.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   102   4e-22
AT2G23780.1 | Symbols:  | RING/U-box superfamily protein | chr2:...   100   3e-21
AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2 | c...    96   3e-20
AT4G27470.1 | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | c...    84   1e-16
AT4G03510.2 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 | c...    84   2e-16
AT4G03510.1 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 | c...    84   2e-16
AT2G26350.1 | Symbols: PEX10, ATPEX10 | peroxin 10 | chr2:112177...    49   5e-06

>AT2G44410.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:18328873-18330114 FORWARD LENGTH=413
          Length = 413

 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 87/119 (73%), Gaps = 5/119 (4%)

Query: 95  LIAKALGLEEPGASKGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNA 154
           LIAKAL +E     K  S  G FFDCNICLE A DP+LTCCGHLFCW CFY+L   Y N 
Sbjct: 105 LIAKALNME-----KTSSVPGGFFDCNICLEKAEDPILTCCGHLFCWGCFYQLPLIYLNI 159

Query: 155 RECPVCNGEVTEADLVPIYGKSSSSGDHRLELEEAGLSIPPRPMAQRVDGIRQQLVRQG 213
           +ECPVC+GEVT+A+++PIYG        + +LE+ G+S+PPRP A+RV+ +RQ+++ +G
Sbjct: 160 KECPVCDGEVTDAEVIPIYGNGDDCDGTKPKLEDCGISLPPRPNAKRVESVRQKIINRG 218


>AT3G58030.4 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 80/122 (65%), Gaps = 6/122 (4%)

Query: 109 KGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEAD 168
           K   S GNFFDCNICL+++++PVLTCCGHL+CWPC Y+     S+A+ECPVC GEVT   
Sbjct: 128 KSSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQW-LQISDAKECPVCKGEVTSKT 186

Query: 169 LVPIYGKSSSSGDHRLELEEA-GLSIPPRPMAQRVDGIRQQLVRQGASSSIVRHILQFHN 227
           + PIYG+    G+H+ E+EE+    +P RP A+R++ +R  + R   +  +   I +  N
Sbjct: 187 VTPIYGR----GNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMIRRIQN 242

Query: 228 LF 229
            F
Sbjct: 243 RF 244


>AT3G58030.3 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 80/122 (65%), Gaps = 6/122 (4%)

Query: 109 KGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEAD 168
           K   S GNFFDCNICL+++++PVLTCCGHL+CWPC Y+     S+A+ECPVC GEVT   
Sbjct: 128 KSSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQW-LQISDAKECPVCKGEVTSKT 186

Query: 169 LVPIYGKSSSSGDHRLELEEA-GLSIPPRPMAQRVDGIRQQLVRQGASSSIVRHILQFHN 227
           + PIYG+    G+H+ E+EE+    +P RP A+R++ +R  + R   +  +   I +  N
Sbjct: 187 VTPIYGR----GNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMIRRIQN 242

Query: 228 LF 229
            F
Sbjct: 243 RF 244


>AT3G58030.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 80/122 (65%), Gaps = 6/122 (4%)

Query: 109 KGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEAD 168
           K   S GNFFDCNICL+++++PVLTCCGHL+CWPC Y+     S+A+ECPVC GEVT   
Sbjct: 128 KSSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQW-LQISDAKECPVCKGEVTSKT 186

Query: 169 LVPIYGKSSSSGDHRLELEEA-GLSIPPRPMAQRVDGIRQQLVRQGASSSIVRHILQFHN 227
           + PIYG+    G+H+ E+EE+    +P RP A+R++ +R  + R   +  +   I +  N
Sbjct: 187 VTPIYGR----GNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMIRRIQN 242

Query: 228 LF 229
            F
Sbjct: 243 RF 244


>AT3G58030.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 80/122 (65%), Gaps = 6/122 (4%)

Query: 109 KGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEAD 168
           K   S GNFFDCNICL+++++PVLTCCGHL+CWPC Y+     S+A+ECPVC GEVT   
Sbjct: 128 KSSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQW-LQISDAKECPVCKGEVTSKT 186

Query: 169 LVPIYGKSSSSGDHRLELEEA-GLSIPPRPMAQRVDGIRQQLVRQGASSSIVRHILQFHN 227
           + PIYG+    G+H+ E+EE+    +P RP A+R++ +R  + R   +  +   I +  N
Sbjct: 187 VTPIYGR----GNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMIRRIQN 242

Query: 228 LF 229
            F
Sbjct: 243 RF 244


>AT2G42030.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:17539069-17540346 REVERSE LENGTH=425
          Length = 425

 Score =  111 bits (278), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 74/122 (60%), Gaps = 7/122 (5%)

Query: 103 EEPGASKGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNG 162
           E+    K   S G+FFDC ICL++++DPV+T CGHL+CW C Y+     S A+ECPVC G
Sbjct: 124 EKRDVEKSVGSDGSFFDCYICLDLSKDPVVTNCGHLYCWSCLYQW-LQVSEAKECPVCKG 182

Query: 163 EVTEADLVPIYGKSSSSGDHRLELEE-AGLSIPPRPMAQRVDGIRQQLVRQG-ASSSIVR 220
           EV+   + PIYG+    G  + E EE +   IP RP A+R + +R  L R G   + I R
Sbjct: 183 EVSVKTVTPIYGR----GIQKRESEEVSNTKIPSRPQARRTESLRTTLNRSGHIPTEIFR 238

Query: 221 HI 222
           H+
Sbjct: 239 HL 240


>AT1G74990.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:28159837-28160250 REVERSE LENGTH=137
          Length = 137

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 66/104 (63%), Gaps = 1/104 (0%)

Query: 116 NFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEADLVPIYGK 175
           N F CNICLE+AR+P++T CGHLFCWPC YK  + +S +  CPVC   V E  LVP+YG 
Sbjct: 15  NNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALVKEDTLVPLYGM 74

Query: 176 SSSSGDHRLELEEAGLSIPPRPMAQRVDGIRQQLVRQGASSSIV 219
              S D R +L  +G+++P RP A R +  R +L ++   SS  
Sbjct: 75  GKPSSDPRSKL-NSGVTVPNRPAATRTETARPRLEQRHHGSSFF 117


>AT1G19310.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:6676424-6677104 REVERSE LENGTH=226
          Length = 226

 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 1/84 (1%)

Query: 118 FDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEADLVPIYGKSS 177
           F+CNICL++A+DP++T CGHLFCWPC YK  + +S +++CPVC   + E  LVP+YG+  
Sbjct: 21  FECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCKAVIEEDRLVPLYGRGK 80

Query: 178 SSGDHRLELEEAGLSIPPRPMAQR 201
           SS D R +    GL +P RP  QR
Sbjct: 81  SSADPRSK-SIPGLEVPNRPSGQR 103


>AT2G23780.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:10123551-10124234 REVERSE LENGTH=227
          Length = 227

 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 58/84 (69%), Gaps = 1/84 (1%)

Query: 118 FDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEADLVPIYGKSS 177
           F+CNIC E+A+DP++T CGHLFCWPC Y+  + +S+++ECPVC   V +  LVP+YG+  
Sbjct: 26  FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQDDKLVPLYGRGK 85

Query: 178 SSGDHRLELEEAGLSIPPRPMAQR 201
           +  D R +    GL IP RP  QR
Sbjct: 86  NQTDPRSK-RYPGLRIPNRPTGQR 108


>AT4G28270.1 | Symbols: ATRMA2, RMA2 | RING membrane-anchor 2 |
           chr4:14007614-14008195 REVERSE LENGTH=193
          Length = 193

 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 22/111 (19%)

Query: 114 TGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARE-------------CPVC 160
           +G  FDCNICL+  RDPV+T CGHLFCWPC +K +YA +N+R+             CPVC
Sbjct: 15  SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVC 74

Query: 161 NGEVTEADLVPIYGKSSSSGDHRLELEEAGLSIPPRPMAQRVD--GIRQQL 209
             +V+EA LVPIYG+   +        ++G ++P RP     D  G+ Q+L
Sbjct: 75  KSDVSEATLVPIYGRGQKA-------PQSGSNVPSRPTGPVYDLRGVGQRL 118


>AT4G27470.1 | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 |
           chr4:13735576-13736307 FORWARD LENGTH=243
          Length = 243

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 95  LIAKALGLEEPGASKGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAY--- 151
            IAK         + G ++    FDCNICL+ A DPV+T CGHLFCWPC YK  +     
Sbjct: 19  FIAKQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSS 78

Query: 152 ----SNARECPVCNGEVTEADLVPIYGKSSSS 179
                +   CPVC   +T   LVP+YG+  SS
Sbjct: 79  VSVDQHQNNCPVCKSNITITSLVPLYGRGMSS 110


>AT4G03510.2 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 |
           chr4:1557905-1558654 REVERSE LENGTH=249
          Length = 249

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 13/90 (14%)

Query: 118 FDCNICLEMARDPVLTCCGHLFCWPCFYKL--------SYAYSNARECPVCNGEVTEADL 169
           FDCNICL+  ++PV+T CGHLFCWPC +K         S  Y   R+CPVC  +V+ + L
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 170 VPIYGKSSSSGDHRLELEEAGLSIPPRPMA 199
           VP+YG+   +       EE   S+P RP+ 
Sbjct: 106 VPLYGRGRCTTQ-----EEGKNSVPKRPVG 130


>AT4G03510.1 | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 |
           chr4:1557905-1558654 REVERSE LENGTH=249
          Length = 249

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 13/90 (14%)

Query: 118 FDCNICLEMARDPVLTCCGHLFCWPCFYKL--------SYAYSNARECPVCNGEVTEADL 169
           FDCNICL+  ++PV+T CGHLFCWPC +K         S  Y   R+CPVC  +V+ + L
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 170 VPIYGKSSSSGDHRLELEEAGLSIPPRPMA 199
           VP+YG+   +       EE   S+P RP+ 
Sbjct: 106 VPLYGRGRCTTQ-----EEGKNSVPKRPVG 130


>AT2G26350.1 | Symbols: PEX10, ATPEX10 | peroxin 10 |
           chr2:11217767-11220415 REVERSE LENGTH=381
          Length = 381

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 112 SSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEADLVP 171
           +ST     C +CL   + P  T CGH+FCW C  +     +  +ECP+C    T + LV 
Sbjct: 319 TSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWC---NEKQECPLCRTPNTHSSLVC 375

Query: 172 IY 173
           +Y
Sbjct: 376 LY 377