Miyakogusa Predicted Gene
- Lj3g3v0463680.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj3g3v0463680.1 tr|G7JJK5|G7JJK5_MEDTR RING finger protein
OS=Medicago truncatula GN=MTR_4g029440 PE=4
SV=1,62.86,0.15,zf-C3HC4_2,NULL; seg,NULL; Ring finger,Zinc finger,
RING-type; RNF5,NULL; ZF_RING_2,Zinc finger, RIN,CUFF.40853.1
(1212 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV424688 weakly similar to UniRef100_A7QRA0 Cluster: Ch... 809 0.0
gnl|LJGI|BW596742 homologue to UniRef100_A7D595 Cluster: PUA dom... 763 0.0
gnl|LJGI|TC65773 similar to UniRef100_A7PVX9 Cluster: Chromosome... 54 2e-06
>gnl|LJGI|AV424688 weakly similar to UniRef100_A7QRA0 Cluster: Chromosome chr13
scaffold_149, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr13 scaffold_149, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (6%)
Length = 414
Score = 809 bits (408), Expect = 0.0
Identities = 411/412 (99%)
Strand = Plus / Plus
Query: 448 gcttactcaaatgcaagggaatgccctgtttgtaatggagaggttactgaagcagatctt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gcttactcaaatgcaagggaatgccctgtttgtaatggagaggttactgaagcagatctt 62
Query: 508 gttcctatttatggaaaatcaagttccagtggcgatcatcggttggaattggaagaagct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gttcctatttatggaaaatcaagttccagtggcgatcatcggttggaattggaagaagct 122
Query: 568 ggtttgagcattcctcctcgacccatggcacaaagagttgatggtattaggcagcagctg 627
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ggttcgagcattcctcctcgacccatggcacaaagagttgatggtattaggcagcagctg 182
Query: 628 gtaaggcaaggagcatcttcctctatagtccgtcacatcttgcagtttcataaccttttt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gtaaggcaaggagcatcttcctctatagtccgtcacatcttgcagtttcataaccttttt 242
Query: 688 ggtggagagcgagttcagtcagaaagccccaataccgcagcaaccgatagaaataatgtt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggtggagagcgagttcagtcagaaagccccaataccgcagcaaccgatagaaataatgtt 302
Query: 748 tcgcgcattcaatctcaaccgcagacagacaataatcaacatcctgattctaatccgatt 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcgcgcattcaatctcaaccgcagacagacaataatcaacatcctgattctaatccgatt 362
Query: 808 tcaaggttgttagtgcaaagagctgcttcattttcatccatttcatcaagat 859
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tcaaggttgttagtgcaaagagctgcttcattttcatccatttcatcaagat 414
>gnl|LJGI|BW596742 homologue to UniRef100_A7D595 Cluster: PUA domain containing protein
precursor; n=1; Halorubrum lacusprofundi ATCC 49239|Rep:
PUA domain containing protein precursor - Halorubrum
lacusprofundi ATCC 49239, partial (7%)
Length = 475
Score = 763 bits (385), Expect = 0.0
Identities = 385/385 (100%)
Strand = Plus / Plus
Query: 828 agctgcttcattttcatccatttcatcaagattaaattctgcaatggattctgcagaaag 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctgcttcattttcatccatttcatcaagattaaattctgcaatggattctgcagaaag 60
Query: 888 actcgttcaggaccttgaatcatatatccatcgcgaccatacaggagaaagcaggcagtt 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actcgttcaggaccttgaatcatatatccatcgcgaccatacaggagaaagcaggcagtt 120
Query: 948 aaatcctcctgatgctgatagaaatccaacttttagtgctactgctacaaaccggtcaga 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaatcctcctgatgctgatagaaatccaacttttagtgctactgctacaaaccggtcaga 180
Query: 1008 gagtctgactcaagatgttgctgcagccaattctgcaactgcaacttctgtgtctcctat 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gagtctgactcaagatgttgctgcagccaattctgcaactgcaacttctgtgtctcctat 240
Query: 1068 aagcagtaatgttgacacagttgctgttatagactcaggaattcagacaacagatgataa 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagcagtaatgttgacacagttgctgttatagactcaggaattcagacaacagatgataa 300
Query: 1128 tgtacagattaggcccttagacccttctacatcttcatggagaactgatgttccaagaga 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtacagattaggcccttagacccttctacatcttcatggagaactgatgttccaagaga 360
Query: 1188 gcgccgaagaagattgcgatgatgg 1212
|||||||||||||||||||||||||
Sbjct: 361 gcgccgaagaagattgcgatgatgg 385
>gnl|LJGI|TC65773 similar to UniRef100_A7PVX9 Cluster: Chromosome chr8 scaffold_34,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_34, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (60%)
Length = 1073
Score = 54.0 bits (27), Expect = 2e-06
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 349 ttttttgattgtaatatatgcttggaaatggctagagatcctgttttgacatgctgtggt 408
|||||||| |||||||| |||||||| |||| || || |||||| |||| || |||||
Sbjct: 35 ttttttgactgtaatatctgcttggacctggccagggaacctgttgtgacttgttgtggc 94
Query: 409 cacttgttttgttgg 423
|| ||||||||||||
Sbjct: 95 catttgttttgttgg 109