Miyakogusa Predicted Gene

Lj3g3v0427290.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0427290.2 tr|G5AQS9|G5AQS9_HETGA Rab3 GTPase-activating
protein non-catalytic subunit OS=Heterocephalus
glaber,31.08,3e-18,RAB3-GAP REGULATORY DOMAIN,Rab3-GAP regulatory
subunit,CUFF.40694.2
         (344 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g464030.1 | Rab3 GTPase-activating protein non-catalytic s...   646   0.0  
Medtr8g464030.2 | Rab3 GTPase-activating protein non-catalytic s...   646   0.0  
Medtr8g464030.3 | Rab3 GTPase-activating protein non-catalytic s...   628   e-180

>Medtr8g464030.1 | Rab3 GTPase-activating protein non-catalytic
           subunit | HC | chr8:22605130-22609044 | 20130731
          Length = 464

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/346 (90%), Positives = 328/346 (94%), Gaps = 2/346 (0%)

Query: 1   MIYPGRVLKLRVRGTKKDLIQD--SSSEEFCLIMPGVIARFDSSDIQNMLQKWFEESQSQ 58
           MIYPGRVLKLRVRGTKKDLIQD  SSSEEFCLIMPGVIARFD S +QNMLQKWFEE+ +Q
Sbjct: 119 MIYPGRVLKLRVRGTKKDLIQDNSSSSEEFCLIMPGVIARFDGSVVQNMLQKWFEEAHAQ 178

Query: 59  LWNQKPKREDSEDFEHSHVKLPYQVWNVGKYGTCADAAITGIMPPPLMEQQSSQRYYCAV 118
           LWNQK K +DSEDF++S  KLPYQ+WN+GKYGTCADAAITGIMPPPLMEQQSSQRYYCAV
Sbjct: 179 LWNQKQKGQDSEDFDNSQQKLPYQLWNIGKYGTCADAAITGIMPPPLMEQQSSQRYYCAV 238

Query: 119 AVGEDAVISAYRLSEDKGRSLVGAILSKVVPAAFSTVASFSKLIWRSEPASPKKSPRKSD 178
           AVG+DAVISAYRLSEDKGRSLVGAILSKVVPA FST+ASFSKLIWRSE  SP KSP+K +
Sbjct: 239 AVGDDAVISAYRLSEDKGRSLVGAILSKVVPATFSTIASFSKLIWRSEHTSPVKSPKKLE 298

Query: 179 QKPQPFARASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGY 238
           QKPQPFARASPLTC+KDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGY
Sbjct: 299 QKPQPFARASPLTCIKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGY 358

Query: 239 RDASCLFMEMLVNKDTASSSSTYYEPMKSDYCLCLAIHAPRKGIIEIWQMRTGPRLRTIP 298
           RDASCLFMEMLVNKD ASSSST YE MKSDYCLCLAIHAPRKGIIEIWQMRTGPRLRTI 
Sbjct: 359 RDASCLFMEMLVNKDLASSSSTCYESMKSDYCLCLAIHAPRKGIIEIWQMRTGPRLRTIS 418

Query: 299 CAKGSKMLQPTYRFGASISSPYVPLEVFLLNGDSGQISVLNRTLDS 344
           CAKGSKMLQP+YRFGAS+SSPYVPLEVFLLNGDSGQISVLNRTLDS
Sbjct: 419 CAKGSKMLQPSYRFGASMSSPYVPLEVFLLNGDSGQISVLNRTLDS 464


>Medtr8g464030.2 | Rab3 GTPase-activating protein non-catalytic
           subunit | HC | chr8:22605130-22609062 | 20130731
          Length = 346

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/346 (90%), Positives = 328/346 (94%), Gaps = 2/346 (0%)

Query: 1   MIYPGRVLKLRVRGTKKDLIQD--SSSEEFCLIMPGVIARFDSSDIQNMLQKWFEESQSQ 58
           MIYPGRVLKLRVRGTKKDLIQD  SSSEEFCLIMPGVIARFD S +QNMLQKWFEE+ +Q
Sbjct: 1   MIYPGRVLKLRVRGTKKDLIQDNSSSSEEFCLIMPGVIARFDGSVVQNMLQKWFEEAHAQ 60

Query: 59  LWNQKPKREDSEDFEHSHVKLPYQVWNVGKYGTCADAAITGIMPPPLMEQQSSQRYYCAV 118
           LWNQK K +DSEDF++S  KLPYQ+WN+GKYGTCADAAITGIMPPPLMEQQSSQRYYCAV
Sbjct: 61  LWNQKQKGQDSEDFDNSQQKLPYQLWNIGKYGTCADAAITGIMPPPLMEQQSSQRYYCAV 120

Query: 119 AVGEDAVISAYRLSEDKGRSLVGAILSKVVPAAFSTVASFSKLIWRSEPASPKKSPRKSD 178
           AVG+DAVISAYRLSEDKGRSLVGAILSKVVPA FST+ASFSKLIWRSE  SP KSP+K +
Sbjct: 121 AVGDDAVISAYRLSEDKGRSLVGAILSKVVPATFSTIASFSKLIWRSEHTSPVKSPKKLE 180

Query: 179 QKPQPFARASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGY 238
           QKPQPFARASPLTC+KDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGY
Sbjct: 181 QKPQPFARASPLTCIKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGY 240

Query: 239 RDASCLFMEMLVNKDTASSSSTYYEPMKSDYCLCLAIHAPRKGIIEIWQMRTGPRLRTIP 298
           RDASCLFMEMLVNKD ASSSST YE MKSDYCLCLAIHAPRKGIIEIWQMRTGPRLRTI 
Sbjct: 241 RDASCLFMEMLVNKDLASSSSTCYESMKSDYCLCLAIHAPRKGIIEIWQMRTGPRLRTIS 300

Query: 299 CAKGSKMLQPTYRFGASISSPYVPLEVFLLNGDSGQISVLNRTLDS 344
           CAKGSKMLQP+YRFGAS+SSPYVPLEVFLLNGDSGQISVLNRTLDS
Sbjct: 301 CAKGSKMLQPSYRFGASMSSPYVPLEVFLLNGDSGQISVLNRTLDS 346


>Medtr8g464030.3 | Rab3 GTPase-activating protein non-catalytic
           subunit | HC | chr8:22605130-22609062 | 20130731
          Length = 501

 Score =  628 bits (1620), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 313/383 (81%), Positives = 328/383 (85%), Gaps = 39/383 (10%)

Query: 1   MIYPGRVLKLRVRGTKKDLIQD--SSSEEFCLIMPGVIARFDSSDIQNMLQKWFEESQSQ 58
           MIYPGRVLKLRVRGTKKDLIQD  SSSEEFCLIMPGVIARFD S +QNMLQKWFEE+ +Q
Sbjct: 119 MIYPGRVLKLRVRGTKKDLIQDNSSSSEEFCLIMPGVIARFDGSVVQNMLQKWFEEAHAQ 178

Query: 59  LWNQKPKREDSEDFEHSHVKLPYQVWNVGKYGTCADAAITGIMPPPLMEQQSSQRYYCAV 118
           LWNQK K +DSEDF++S  KLPYQ+WN+GKYGTCADAAITGIMPPPLMEQQSSQRYYCAV
Sbjct: 179 LWNQKQKGQDSEDFDNSQQKLPYQLWNIGKYGTCADAAITGIMPPPLMEQQSSQRYYCAV 238

Query: 119 AVGEDAVISAYRLSEDKGRSLVGAILSKVVPAAFSTVASFSKLIWRSEPASPKKSPRKSD 178
           AVG+DAVISAYRLSEDKGRSLVGAILSKVVPA FST+ASFSKLIWRSE  SP KSP+K +
Sbjct: 239 AVGDDAVISAYRLSEDKGRSLVGAILSKVVPATFSTIASFSKLIWRSEHTSPVKSPKKLE 298

Query: 179 QKPQPFARASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWK-- 236
           QKPQPFARASPLTC+KDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWK  
Sbjct: 299 QKPQPFARASPLTCIKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKVY 358

Query: 237 -----------------------------------GYRDASCLFMEMLVNKDTASSSSTY 261
                                              GYRDASCLFMEMLVNKD ASSSST 
Sbjct: 359 FFKTFGPKSVTFPPPKNLQIKKALYSLNIKFSILQGYRDASCLFMEMLVNKDLASSSSTC 418

Query: 262 YEPMKSDYCLCLAIHAPRKGIIEIWQMRTGPRLRTIPCAKGSKMLQPTYRFGASISSPYV 321
           YE MKSDYCLCLAIHAPRKGIIEIWQMRTGPRLRTI CAKGSKMLQP+YRFGAS+SSPYV
Sbjct: 419 YESMKSDYCLCLAIHAPRKGIIEIWQMRTGPRLRTISCAKGSKMLQPSYRFGASMSSPYV 478

Query: 322 PLEVFLLNGDSGQISVLNRTLDS 344
           PLEVFLLNGDSGQISVLNRTLDS
Sbjct: 479 PLEVFLLNGDSGQISVLNRTLDS 501