Miyakogusa Predicted Gene

Lj3g3v0370470.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0370470.2 Non Characterized Hit- tr|I1NE18|I1NE18_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.46422
PE,47.5,0.0000000000001,seg,NULL; SPOC,Spen paralogue and orthologue
SPOC, C-terminal; OS09G0516300 PROTEIN,NULL; RNA RECOGN,CUFF.40584.2
         (612 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g068120.2 | flowering time control FPA-like protein | HC |...   543   e-154
Medtr4g068120.1 | flowering time control FPA-like protein | HC |...   543   e-154
Medtr3g079310.1 | RNA recognition motif (RRM) containing protein...   139   7e-33

>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
           chr4:25458538-25448035 | 20130731
          Length = 973

 Score =  543 bits (1400), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 333/662 (50%), Positives = 392/662 (59%), Gaps = 108/662 (16%)

Query: 1   MDTFGHNRPRVPNHFPGQLPLA-------PMRPFGPQGH-DPLISAPGFNQ-----IGPN 47
           MD FGHNRP +PN FPGQLP         PMRPFGP G  + ++S P FN+      GPN
Sbjct: 331 MDLFGHNRPMIPNSFPGQLPSGGNVGPNIPMRPFGPNGGPESVVSGPEFNENSTLHKGPN 390

Query: 48  WKRPSPPAPGMHHSSMPGIRPPTRSTSGAWDLLGVNQLQRDSKRSRTNGAFPIGNLSRNI 107
           WKRPSPPA G+  S +PG R P RS+SGAWD+L +N + RDSKRSR +GA P        
Sbjct: 391 WKRPSPPAQGLLSSPVPGARLPARSSSGAWDVLDINHIPRDSKRSRIDGALP-------- 442

Query: 108 DNHGFELEQTYQIDPVIDGGGSGPKSHLGPVGNRISAAFPGSVTSVQLDVDHIWRGIIAK 167
                        DP    G       LG    RI+    G V +VQ   DHIWRG+IAK
Sbjct: 443 -----------NDDPYAGRG------ILGSASTRIT----GGVHAVQ--PDHIWRGLIAK 479

Query: 168 GGTDMCRARCVPIGKGIATELPDVINCAAKIRLDLLTEHYADAAGFDVVFFLPDSEADFA 227
           GGT +CRARC+P+GKGI TELP+V++C+A+  LD L  HYADA  F++VFFLPDSE DF 
Sbjct: 480 GGTPVCRARCIPVGKGIGTELPEVVDCSARTGLDTLAAHYADAIDFEIVFFLPDSENDFG 539

Query: 228 SFTEFINYLKAKNCAGVVKFVDNTRLFLVPPSDFLTKVLRVIGPERLYGVVLKFPLNPST 287
           S+TEF+ YL AKN AGV KF +NT LFLVPPSDFLT VL+V GPERLYGVVLKF    S 
Sbjct: 540 SYTEFLRYLGAKNRAGVAKF-ENTTLFLVPPSDFLTDVLKVTGPERLYGVVLKFAPVQSG 598

Query: 288 TPMQQSMHLPSPSTHYMQHILPTQAEYGSISAKQEQVLPVDYNRLLHEDSKLPSKPDHRA 347
            P+ QS HLP PS  YMQ + P+QAEY    AK+EQVL ++YNR+LHEDSKLP+K  +  
Sbjct: 599 VPVHQSSHLPVPSNQYMQQMPPSQAEYDMNPAKEEQVLAMNYNRMLHEDSKLPAKQVYPP 658

Query: 348 TSGLYSVRPVPPN---NTVSE------LLTPELIATLTSLPPATTQSSATVAAKTSVDSS 398
           T G  SV+P   +   NT +        LTPELIATL S  P   QS A   AK+   SS
Sbjct: 659 TGGPSSVQPAASDYALNTAASGSQAGVALTPELIATLASFLPTNVQSPAIDGAKSGAGSS 718

Query: 399 TVKPRFPPFAPNDGNQAHLWKQQDHQITYPTSHHPQQFGSSYNVQSAQYHFYPPASTPYH 458
           TVKP FPP APNDGNQ+ +WK QDHQI   + H  QQF + YN  +A +  YPPAS P H
Sbjct: 719 TVKPPFPPVAPNDGNQSQIWK-QDHQIADQSIHPSQQFRNMYNSHNAHHQPYPPASAPGH 777

Query: 459 YAQVVSGSDSYHFQDTAASLQQLGTVSYKPMPNFTIPSQSGQVAVSPQVGQQYHVDVSAS 518
            AQ  SGS   H QD A + QQ G VS + + NF  P+QSGQVA SP    QY  +V  +
Sbjct: 778 TAQAFSGSS--HIQDNAVNQQQQGVVSSRLVSNFVTPTQSGQVAASPHFSHQYQAEVPPN 835

Query: 519 TQ----GTDVSILYSSNR------------------------------FQQPSNFIPPST 544
           TQ    G+DVS+LY+S                                FQQP+N I  S+
Sbjct: 836 TQKGFPGSDVSVLYNSQAFQQPNNNHHPFQQPNNNPQHFQQSNNNPQPFQQPNNSIALSS 895

Query: 545 QVPSANGLQQQTVTPYTADTADSVNSEPPKQQHQLAFFGD-------------QSTLQFA 591
           QV SAN  Q Q V  Y   TAD VNS PP QQH     G              QSTLQFA
Sbjct: 896 QVNSAN-PQHQPVMQY---TADQVNSNPPIQQHPAFGVGQGPPELEADKNQRYQSTLQFA 951

Query: 592 RN 593
            N
Sbjct: 952 AN 953


>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
           chr4:25458538-25450507 | 20130731
          Length = 973

 Score =  543 bits (1400), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 333/662 (50%), Positives = 392/662 (59%), Gaps = 108/662 (16%)

Query: 1   MDTFGHNRPRVPNHFPGQLPLA-------PMRPFGPQGH-DPLISAPGFNQ-----IGPN 47
           MD FGHNRP +PN FPGQLP         PMRPFGP G  + ++S P FN+      GPN
Sbjct: 331 MDLFGHNRPMIPNSFPGQLPSGGNVGPNIPMRPFGPNGGPESVVSGPEFNENSTLHKGPN 390

Query: 48  WKRPSPPAPGMHHSSMPGIRPPTRSTSGAWDLLGVNQLQRDSKRSRTNGAFPIGNLSRNI 107
           WKRPSPPA G+  S +PG R P RS+SGAWD+L +N + RDSKRSR +GA P        
Sbjct: 391 WKRPSPPAQGLLSSPVPGARLPARSSSGAWDVLDINHIPRDSKRSRIDGALP-------- 442

Query: 108 DNHGFELEQTYQIDPVIDGGGSGPKSHLGPVGNRISAAFPGSVTSVQLDVDHIWRGIIAK 167
                        DP    G       LG    RI+    G V +VQ   DHIWRG+IAK
Sbjct: 443 -----------NDDPYAGRG------ILGSASTRIT----GGVHAVQ--PDHIWRGLIAK 479

Query: 168 GGTDMCRARCVPIGKGIATELPDVINCAAKIRLDLLTEHYADAAGFDVVFFLPDSEADFA 227
           GGT +CRARC+P+GKGI TELP+V++C+A+  LD L  HYADA  F++VFFLPDSE DF 
Sbjct: 480 GGTPVCRARCIPVGKGIGTELPEVVDCSARTGLDTLAAHYADAIDFEIVFFLPDSENDFG 539

Query: 228 SFTEFINYLKAKNCAGVVKFVDNTRLFLVPPSDFLTKVLRVIGPERLYGVVLKFPLNPST 287
           S+TEF+ YL AKN AGV KF +NT LFLVPPSDFLT VL+V GPERLYGVVLKF    S 
Sbjct: 540 SYTEFLRYLGAKNRAGVAKF-ENTTLFLVPPSDFLTDVLKVTGPERLYGVVLKFAPVQSG 598

Query: 288 TPMQQSMHLPSPSTHYMQHILPTQAEYGSISAKQEQVLPVDYNRLLHEDSKLPSKPDHRA 347
            P+ QS HLP PS  YMQ + P+QAEY    AK+EQVL ++YNR+LHEDSKLP+K  +  
Sbjct: 599 VPVHQSSHLPVPSNQYMQQMPPSQAEYDMNPAKEEQVLAMNYNRMLHEDSKLPAKQVYPP 658

Query: 348 TSGLYSVRPVPPN---NTVSE------LLTPELIATLTSLPPATTQSSATVAAKTSVDSS 398
           T G  SV+P   +   NT +        LTPELIATL S  P   QS A   AK+   SS
Sbjct: 659 TGGPSSVQPAASDYALNTAASGSQAGVALTPELIATLASFLPTNVQSPAIDGAKSGAGSS 718

Query: 399 TVKPRFPPFAPNDGNQAHLWKQQDHQITYPTSHHPQQFGSSYNVQSAQYHFYPPASTPYH 458
           TVKP FPP APNDGNQ+ +WK QDHQI   + H  QQF + YN  +A +  YPPAS P H
Sbjct: 719 TVKPPFPPVAPNDGNQSQIWK-QDHQIADQSIHPSQQFRNMYNSHNAHHQPYPPASAPGH 777

Query: 459 YAQVVSGSDSYHFQDTAASLQQLGTVSYKPMPNFTIPSQSGQVAVSPQVGQQYHVDVSAS 518
            AQ  SGS   H QD A + QQ G VS + + NF  P+QSGQVA SP    QY  +V  +
Sbjct: 778 TAQAFSGSS--HIQDNAVNQQQQGVVSSRLVSNFVTPTQSGQVAASPHFSHQYQAEVPPN 835

Query: 519 TQ----GTDVSILYSSNR------------------------------FQQPSNFIPPST 544
           TQ    G+DVS+LY+S                                FQQP+N I  S+
Sbjct: 836 TQKGFPGSDVSVLYNSQAFQQPNNNHHPFQQPNNNPQHFQQSNNNPQPFQQPNNSIALSS 895

Query: 545 QVPSANGLQQQTVTPYTADTADSVNSEPPKQQHQLAFFGD-------------QSTLQFA 591
           QV SAN  Q Q V  Y   TAD VNS PP QQH     G              QSTLQFA
Sbjct: 896 QVNSAN-PQHQPVMQY---TADQVNSNPPIQQHPAFGVGQGPPELEADKNQRYQSTLQFA 951

Query: 592 RN 593
            N
Sbjct: 952 AN 953


>Medtr3g079310.1 | RNA recognition motif (RRM) containing protein |
           HC | chr3:35657324-35668580 | 20130731
          Length = 928

 Score =  139 bits (350), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 100/160 (62%), Gaps = 4/160 (2%)

Query: 161 WRGIIAKGGTDMCRARCVPIGKGIATELPDVINCAAKIRLDLLTEHYADAAGFDVVFFLP 220
           W G IAKGGT +CRARC P+GK +   LP+ ++C A+  LD+L++HY  A G  VVFF+P
Sbjct: 496 WEGTIAKGGTPICRARCFPVGKVLDIALPEFLDCTARTSLDMLSKHYYQAVGVWVVFFVP 555

Query: 221 DSEADFASFTEFINYLKAKNCAGVVKFVDNTRLFLVPPSDFLTKVLRVIGPERLYGVVLK 280
            S+AD   + EF++YL+ K  A V K  D T LFLVPPSDF  KVL+V G   + GV+L+
Sbjct: 556 GSDADIEFYNEFMHYLEEKKRAAVSKVDDKTTLFLVPPSDFSEKVLKVPGKLSISGVILR 615

Query: 281 FP---LNPSTTPMQQSMHLPSPSTHYMQHILPTQAEYGSI 317
                LN     +++ M   + S+ Y ++IL   + + S+
Sbjct: 616 LEYPGLNQGPMHIERDMKNENLSS-YNENILHPNSSFPSV 654