Miyakogusa Predicted Gene

Lj3g3v0370470.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0370470.2 Non Chatacterized Hit- tr|I1NE18|I1NE18_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.46422
PE,47.5,0.0000000000001,seg,NULL; SPOC,Spen paralogue and orthologue
SPOC, C-terminal; OS09G0516300 PROTEIN,NULL; RNA RECOGN,CUFF.40584.2
         (612 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098...   228   7e-60
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098...   228   7e-60
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098...   228   7e-60
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098...   228   7e-60
AT4G12640.1 | Symbols:  | RNA recognition motif (RRM)-containing...   131   1e-30

>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
           REVERSE LENGTH=901
          Length = 901

 Score =  228 bits (582), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 202/603 (33%), Positives = 285/603 (47%), Gaps = 125/603 (20%)

Query: 46  PNWKRPS---------PPAPGMHHSSMPGIRPPTRSTSGAWDLLGVNQLQRDSKRSRTNG 96
           PNW+RPS         P  PG+  S   G R P RS   +W+     QL R+SKR+R +G
Sbjct: 347 PNWRRPSANGTGILPSPTGPGILPSPAQGTRRPMRSNPDSWEGYDPAQLVRESKRTRRDG 406

Query: 97  AFPIGNLSRNIDNHGFELEQTYQIDPVIDGGGSGPKSHLGPVGNRISAAFPGSVTSVQL- 155
           +                          +DG          P+G    +   GSV +  + 
Sbjct: 407 S--------------------------VDG--------FTPMGVDERSFGRGSVAARPIR 432

Query: 156 ---DVDHIWRGIIAKGGTDMCRARCVPIGKGIATELPDVINCAAKIRLDLLTEHYADAAG 212
              D DHIWRG+IAKGGT +C ARCVP+GKGI T+LP+V+NC+A+  L++L +HYA A G
Sbjct: 433 GPPDSDHIWRGMIAKGGTPVCCARCVPMGKGIETKLPEVVNCSARTDLNMLAKHYAVAIG 492

Query: 213 FDVVFFLPDSEADFASFTEFINYLKAKNCAGVVKFVDNTRLFLVPPSDFLTKVLRVIGPE 272
            ++VFF+PD E DFAS+TEF+ YL +K+ AGV K  D T LFLVPPSDFLT VL+V   E
Sbjct: 493 CEIVFFVPDREEDFASYTEFLRYLSSKDRAGVAKLDDGTTLFLVPPSDFLTDVLQVTRQE 552

Query: 273 RLYGVVLKFPLNPSTTPMQQSMHLPSPST--HYMQHILPTQAEYGSISAKQEQVLPVDYN 330
           RLYGVVLK P  P   P+  S    S S   HYM                Q +  P + +
Sbjct: 553 RLYGVVLKLP--PPAVPVTASYRQESQSNPLHYM---------------DQARDSPANAS 595

Query: 331 RLLH--EDSKLPSKPDHRATSGLYSV-RPVP-PNNTVSEL---LTPELIATLTSLPPATT 383
             L+   ++ +   P+H   +   SV  P+  PNN   +    LTPEL+ATL S+ PAT+
Sbjct: 596 HSLYPPRENYIRGAPEHLTAASKPSVSEPLRIPNNAAPQAGVSLTPELLATLASILPATS 655

Query: 384 QSSATVAAK-TSVDSSTVKPRFPPFAPNDGNQ-AHLWKQQDHQITYPTSHHPQQFGSSY- 440
           Q +A  + +  S  S+ V          +G   +  WK+    +   ++   QQ+G+ Y 
Sbjct: 656 QPAAPESHQPMSGPSTVVSTAHQSNGLYNGEAPSQAWKRGPQTVHDASNQSFQQYGNQYT 715

Query: 441 ---NVQSAQYHFYPPASTPYHYAQVVSGSDSYHFQDTAASLQQLGTVSYKPMPNFTIPSQ 497
               +      + P ++ P + + +V G+  Y  Q  + ++ QL  +   P  N+++ +Q
Sbjct: 716 PAGQLPPPPSRYPPASNNPNYTSGMVHGNMQY--QSQSVNMPQLSPLPNMPHNNYSMYTQ 773

Query: 498 -SGQVAVSPQVGQQYHVDVSASTQGTDVSILYSSNRFQQPSNFIP-PSTQVPSANGL--- 552
            S    VS  + QQY  + S   Q                 N+ P PS Q  + +G+   
Sbjct: 774 GSSNHPVSQPMVQQYQPEASMPNQ-----------------NYGPIPSYQQANFHGVTTN 816

Query: 553 QQQTVTPYTADT-----ADSVNSEPPKQQHQL--AFFGD---------------QSTLQF 590
           Q Q + P          AD  N EP  Q  +L     GD               QSTLQF
Sbjct: 817 QAQNLNPSQFQAAMQPPADKANLEPQNQALRLQPMISGDGQGTTDGEVDKNQRYQSTLQF 876

Query: 591 ARN 593
           A N
Sbjct: 877 AAN 879


>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
           REVERSE LENGTH=901
          Length = 901

 Score =  228 bits (582), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 202/603 (33%), Positives = 285/603 (47%), Gaps = 125/603 (20%)

Query: 46  PNWKRPS---------PPAPGMHHSSMPGIRPPTRSTSGAWDLLGVNQLQRDSKRSRTNG 96
           PNW+RPS         P  PG+  S   G R P RS   +W+     QL R+SKR+R +G
Sbjct: 347 PNWRRPSANGTGILPSPTGPGILPSPAQGTRRPMRSNPDSWEGYDPAQLVRESKRTRRDG 406

Query: 97  AFPIGNLSRNIDNHGFELEQTYQIDPVIDGGGSGPKSHLGPVGNRISAAFPGSVTSVQL- 155
           +                          +DG          P+G    +   GSV +  + 
Sbjct: 407 S--------------------------VDG--------FTPMGVDERSFGRGSVAARPIR 432

Query: 156 ---DVDHIWRGIIAKGGTDMCRARCVPIGKGIATELPDVINCAAKIRLDLLTEHYADAAG 212
              D DHIWRG+IAKGGT +C ARCVP+GKGI T+LP+V+NC+A+  L++L +HYA A G
Sbjct: 433 GPPDSDHIWRGMIAKGGTPVCCARCVPMGKGIETKLPEVVNCSARTDLNMLAKHYAVAIG 492

Query: 213 FDVVFFLPDSEADFASFTEFINYLKAKNCAGVVKFVDNTRLFLVPPSDFLTKVLRVIGPE 272
            ++VFF+PD E DFAS+TEF+ YL +K+ AGV K  D T LFLVPPSDFLT VL+V   E
Sbjct: 493 CEIVFFVPDREEDFASYTEFLRYLSSKDRAGVAKLDDGTTLFLVPPSDFLTDVLQVTRQE 552

Query: 273 RLYGVVLKFPLNPSTTPMQQSMHLPSPST--HYMQHILPTQAEYGSISAKQEQVLPVDYN 330
           RLYGVVLK P  P   P+  S    S S   HYM                Q +  P + +
Sbjct: 553 RLYGVVLKLP--PPAVPVTASYRQESQSNPLHYM---------------DQARDSPANAS 595

Query: 331 RLLH--EDSKLPSKPDHRATSGLYSV-RPVP-PNNTVSEL---LTPELIATLTSLPPATT 383
             L+   ++ +   P+H   +   SV  P+  PNN   +    LTPEL+ATL S+ PAT+
Sbjct: 596 HSLYPPRENYIRGAPEHLTAASKPSVSEPLRIPNNAAPQAGVSLTPELLATLASILPATS 655

Query: 384 QSSATVAAK-TSVDSSTVKPRFPPFAPNDGNQ-AHLWKQQDHQITYPTSHHPQQFGSSY- 440
           Q +A  + +  S  S+ V          +G   +  WK+    +   ++   QQ+G+ Y 
Sbjct: 656 QPAAPESHQPMSGPSTVVSTAHQSNGLYNGEAPSQAWKRGPQTVHDASNQSFQQYGNQYT 715

Query: 441 ---NVQSAQYHFYPPASTPYHYAQVVSGSDSYHFQDTAASLQQLGTVSYKPMPNFTIPSQ 497
               +      + P ++ P + + +V G+  Y  Q  + ++ QL  +   P  N+++ +Q
Sbjct: 716 PAGQLPPPPSRYPPASNNPNYTSGMVHGNMQY--QSQSVNMPQLSPLPNMPHNNYSMYTQ 773

Query: 498 -SGQVAVSPQVGQQYHVDVSASTQGTDVSILYSSNRFQQPSNFIP-PSTQVPSANGL--- 552
            S    VS  + QQY  + S   Q                 N+ P PS Q  + +G+   
Sbjct: 774 GSSNHPVSQPMVQQYQPEASMPNQ-----------------NYGPIPSYQQANFHGVTTN 816

Query: 553 QQQTVTPYTADT-----ADSVNSEPPKQQHQL--AFFGD---------------QSTLQF 590
           Q Q + P          AD  N EP  Q  +L     GD               QSTLQF
Sbjct: 817 QAQNLNPSQFQAAMQPPADKANLEPQNQALRLQPMISGDGQGTTDGEVDKNQRYQSTLQF 876

Query: 591 ARN 593
           A N
Sbjct: 877 AAN 879


>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
           REVERSE LENGTH=901
          Length = 901

 Score =  228 bits (582), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 202/603 (33%), Positives = 285/603 (47%), Gaps = 125/603 (20%)

Query: 46  PNWKRPS---------PPAPGMHHSSMPGIRPPTRSTSGAWDLLGVNQLQRDSKRSRTNG 96
           PNW+RPS         P  PG+  S   G R P RS   +W+     QL R+SKR+R +G
Sbjct: 347 PNWRRPSANGTGILPSPTGPGILPSPAQGTRRPMRSNPDSWEGYDPAQLVRESKRTRRDG 406

Query: 97  AFPIGNLSRNIDNHGFELEQTYQIDPVIDGGGSGPKSHLGPVGNRISAAFPGSVTSVQL- 155
           +                          +DG          P+G    +   GSV +  + 
Sbjct: 407 S--------------------------VDG--------FTPMGVDERSFGRGSVAARPIR 432

Query: 156 ---DVDHIWRGIIAKGGTDMCRARCVPIGKGIATELPDVINCAAKIRLDLLTEHYADAAG 212
              D DHIWRG+IAKGGT +C ARCVP+GKGI T+LP+V+NC+A+  L++L +HYA A G
Sbjct: 433 GPPDSDHIWRGMIAKGGTPVCCARCVPMGKGIETKLPEVVNCSARTDLNMLAKHYAVAIG 492

Query: 213 FDVVFFLPDSEADFASFTEFINYLKAKNCAGVVKFVDNTRLFLVPPSDFLTKVLRVIGPE 272
            ++VFF+PD E DFAS+TEF+ YL +K+ AGV K  D T LFLVPPSDFLT VL+V   E
Sbjct: 493 CEIVFFVPDREEDFASYTEFLRYLSSKDRAGVAKLDDGTTLFLVPPSDFLTDVLQVTRQE 552

Query: 273 RLYGVVLKFPLNPSTTPMQQSMHLPSPST--HYMQHILPTQAEYGSISAKQEQVLPVDYN 330
           RLYGVVLK P  P   P+  S    S S   HYM                Q +  P + +
Sbjct: 553 RLYGVVLKLP--PPAVPVTASYRQESQSNPLHYM---------------DQARDSPANAS 595

Query: 331 RLLH--EDSKLPSKPDHRATSGLYSV-RPVP-PNNTVSEL---LTPELIATLTSLPPATT 383
             L+   ++ +   P+H   +   SV  P+  PNN   +    LTPEL+ATL S+ PAT+
Sbjct: 596 HSLYPPRENYIRGAPEHLTAASKPSVSEPLRIPNNAAPQAGVSLTPELLATLASILPATS 655

Query: 384 QSSATVAAK-TSVDSSTVKPRFPPFAPNDGNQ-AHLWKQQDHQITYPTSHHPQQFGSSY- 440
           Q +A  + +  S  S+ V          +G   +  WK+    +   ++   QQ+G+ Y 
Sbjct: 656 QPAAPESHQPMSGPSTVVSTAHQSNGLYNGEAPSQAWKRGPQTVHDASNQSFQQYGNQYT 715

Query: 441 ---NVQSAQYHFYPPASTPYHYAQVVSGSDSYHFQDTAASLQQLGTVSYKPMPNFTIPSQ 497
               +      + P ++ P + + +V G+  Y  Q  + ++ QL  +   P  N+++ +Q
Sbjct: 716 PAGQLPPPPSRYPPASNNPNYTSGMVHGNMQY--QSQSVNMPQLSPLPNMPHNNYSMYTQ 773

Query: 498 -SGQVAVSPQVGQQYHVDVSASTQGTDVSILYSSNRFQQPSNFIP-PSTQVPSANGL--- 552
            S    VS  + QQY  + S   Q                 N+ P PS Q  + +G+   
Sbjct: 774 GSSNHPVSQPMVQQYQPEASMPNQ-----------------NYGPIPSYQQANFHGVTTN 816

Query: 553 QQQTVTPYTADT-----ADSVNSEPPKQQHQL--AFFGD---------------QSTLQF 590
           Q Q + P          AD  N EP  Q  +L     GD               QSTLQF
Sbjct: 817 QAQNLNPSQFQAAMQPPADKANLEPQNQALRLQPMISGDGQGTTDGEVDKNQRYQSTLQF 876

Query: 591 ARN 593
           A N
Sbjct: 877 AAN 879


>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
           REVERSE LENGTH=858
          Length = 858

 Score =  228 bits (582), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 202/603 (33%), Positives = 285/603 (47%), Gaps = 125/603 (20%)

Query: 46  PNWKRPS---------PPAPGMHHSSMPGIRPPTRSTSGAWDLLGVNQLQRDSKRSRTNG 96
           PNW+RPS         P  PG+  S   G R P RS   +W+     QL R+SKR+R +G
Sbjct: 304 PNWRRPSANGTGILPSPTGPGILPSPAQGTRRPMRSNPDSWEGYDPAQLVRESKRTRRDG 363

Query: 97  AFPIGNLSRNIDNHGFELEQTYQIDPVIDGGGSGPKSHLGPVGNRISAAFPGSVTSVQL- 155
           +                          +DG          P+G    +   GSV +  + 
Sbjct: 364 S--------------------------VDG--------FTPMGVDERSFGRGSVAARPIR 389

Query: 156 ---DVDHIWRGIIAKGGTDMCRARCVPIGKGIATELPDVINCAAKIRLDLLTEHYADAAG 212
              D DHIWRG+IAKGGT +C ARCVP+GKGI T+LP+V+NC+A+  L++L +HYA A G
Sbjct: 390 GPPDSDHIWRGMIAKGGTPVCCARCVPMGKGIETKLPEVVNCSARTDLNMLAKHYAVAIG 449

Query: 213 FDVVFFLPDSEADFASFTEFINYLKAKNCAGVVKFVDNTRLFLVPPSDFLTKVLRVIGPE 272
            ++VFF+PD E DFAS+TEF+ YL +K+ AGV K  D T LFLVPPSDFLT VL+V   E
Sbjct: 450 CEIVFFVPDREEDFASYTEFLRYLSSKDRAGVAKLDDGTTLFLVPPSDFLTDVLQVTRQE 509

Query: 273 RLYGVVLKFPLNPSTTPMQQSMHLPSPST--HYMQHILPTQAEYGSISAKQEQVLPVDYN 330
           RLYGVVLK P  P   P+  S    S S   HYM                Q +  P + +
Sbjct: 510 RLYGVVLKLP--PPAVPVTASYRQESQSNPLHYM---------------DQARDSPANAS 552

Query: 331 RLLH--EDSKLPSKPDHRATSGLYSV-RPVP-PNNTVSEL---LTPELIATLTSLPPATT 383
             L+   ++ +   P+H   +   SV  P+  PNN   +    LTPEL+ATL S+ PAT+
Sbjct: 553 HSLYPPRENYIRGAPEHLTAASKPSVSEPLRIPNNAAPQAGVSLTPELLATLASILPATS 612

Query: 384 QSSATVAAK-TSVDSSTVKPRFPPFAPNDGNQ-AHLWKQQDHQITYPTSHHPQQFGSSY- 440
           Q +A  + +  S  S+ V          +G   +  WK+    +   ++   QQ+G+ Y 
Sbjct: 613 QPAAPESHQPMSGPSTVVSTAHQSNGLYNGEAPSQAWKRGPQTVHDASNQSFQQYGNQYT 672

Query: 441 ---NVQSAQYHFYPPASTPYHYAQVVSGSDSYHFQDTAASLQQLGTVSYKPMPNFTIPSQ 497
               +      + P ++ P + + +V G+  Y  Q  + ++ QL  +   P  N+++ +Q
Sbjct: 673 PAGQLPPPPSRYPPASNNPNYTSGMVHGNMQY--QSQSVNMPQLSPLPNMPHNNYSMYTQ 730

Query: 498 -SGQVAVSPQVGQQYHVDVSASTQGTDVSILYSSNRFQQPSNFIP-PSTQVPSANGL--- 552
            S    VS  + QQY  + S   Q                 N+ P PS Q  + +G+   
Sbjct: 731 GSSNHPVSQPMVQQYQPEASMPNQ-----------------NYGPIPSYQQANFHGVTTN 773

Query: 553 QQQTVTPYTADT-----ADSVNSEPPKQQHQL--AFFGD---------------QSTLQF 590
           Q Q + P          AD  N EP  Q  +L     GD               QSTLQF
Sbjct: 774 QAQNLNPSQFQAAMQPPADKANLEPQNQALRLQPMISGDGQGTTDGEVDKNQRYQSTLQF 833

Query: 591 ARN 593
           A N
Sbjct: 834 AAN 836


>AT4G12640.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr4:7462697-7467630 FORWARD LENGTH=823
          Length = 823

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/137 (45%), Positives = 87/137 (63%), Gaps = 2/137 (1%)

Query: 158 DHIWRGIIAKGGTDMCRARCVPIGKGIATELPDVINCAAKIRLDLLTEHYADAAGFDVVF 217
           D  W G IAKGG  +CRA+C P+GK +   LP+ ++C A+  LD+L +HY  ++   VVF
Sbjct: 468 DWNWEGTIAKGGNPICRAKCFPVGKVMDMMLPEFLDCTARTGLDMLAKHYYQSSKAWVVF 527

Query: 218 FLPDSEADFASFTEFINYLKAKNCAGVVKFVDNTRLFLVPPSDFLTKVLRVIGPERLYGV 277
           F+P S+AD   + EF++YL+ K  A V K  D T LFLVPPSDF  KVL+V G   + GV
Sbjct: 528 FVPGSDADIVFYDEFMHYLEEKQRAAVSKLDDTTTLFLVPPSDFSEKVLKVPGKLSISGV 587

Query: 278 VLKFPLNPSTT--PMQQ 292
           +L+     S +  P+QQ
Sbjct: 588 ILRLECGGSGSGGPVQQ 604