Miyakogusa Predicted Gene

Lj3g3v0370450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0370450.1 tr|B9MY69|B9MY69_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_594552 PE=4
SV=1,67.53,2e-19,DUF936,Protein of unknown function DUF936, plant;
FAMILY NOT NAMED,NULL; seg,NULL,CUFF.40845.1
         (77 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g099095.1 | DUF936 family protein | HC | chr2:42469319-424...    93   5e-20
Medtr4g068050.1 | DUF936 family protein | HC | chr4:25499155-254...    88   2e-18

>Medtr2g099095.1 | DUF936 family protein | HC |
           chr2:42469319-42464410 | 20130731
          Length = 742

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 55/77 (71%), Gaps = 4/77 (5%)

Query: 1   MLSQLKSVNDWLXXXXXXXXXXXXXXXCQIPAETIDRLRKKIYEYLLTHVESAAAALSGG 60
           ML+QLKSVNDWL               CQI AETI+RLRKKIYEYLLTHVESAAAALSGG
Sbjct: 670 MLTQLKSVNDWLDEIGVSKDEGEL---CQISAETINRLRKKIYEYLLTHVESAAAALSGG 726

Query: 61  PQSSSTPIQTTQIKGKR 77
            QS    IQTTQ+K KR
Sbjct: 727 SQSLPQ-IQTTQVKSKR 742


>Medtr4g068050.1 | DUF936 family protein | HC |
           chr4:25499155-25494660 | 20130731
          Length = 727

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 53/77 (68%), Gaps = 8/77 (10%)

Query: 1   MLSQLKSVNDWLXXXXXXXXXXXXXXXCQIPAETIDRLRKKIYEYLLTHVESAAAALSGG 60
           +L+QLKSVNDWL               CQIP ETIDRLRKKIYEYLLTHVESAAAAL+  
Sbjct: 659 ILTQLKSVNDWLDEIGSSKNEGEL---CQIPTETIDRLRKKIYEYLLTHVESAAAALTCD 715

Query: 61  PQSSSTPIQTTQIKGKR 77
            QS     Q+T+IKGKR
Sbjct: 716 SQS-----QSTEIKGKR 727