Miyakogusa Predicted Gene

Lj3g3v0370450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0370450.1 tr|B9MY69|B9MY69_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_594552 PE=4
SV=1,67.53,2e-19,DUF936,Protein of unknown function DUF936, plant;
FAMILY NOT NAMED,NULL; seg,NULL,CUFF.40845.1
         (77 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08760.1 | Symbols:  | Plant protein of unknown function (DUF...    60   2e-10

>AT1G08760.1 | Symbols:  | Plant protein of unknown function
           (DUF936) | chr1:2805478-2808409 FORWARD LENGTH=748
          Length = 748

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 1   MLSQLKSVNDWLXXXXXXXXXXXXXXXCQIPAETIDRLRKKIYEYLLTHVE 51
           MLSQLKSVNDWL                ++  ETIDRLRKKIYEYLLTHVE
Sbjct: 674 MLSQLKSVNDWLDEIGSKEDEEGLQ---EVSKETIDRLRKKIYEYLLTHVE 721