Miyakogusa Predicted Gene

Lj3g3v0306890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0306890.1 tr|C7QN35|C7QN35_CYAP0 Mini-ribonuclease 3
OS=Cyanothece sp. (strain PCC 8802) GN=mrnC PE=3
SV=1,43.97,5e-19,RNase III domain-like,Ribonuclease III domain;
Ribonuclease_3,Ribonuclease III domain;
seg,NULL,NODE_27135_length_1192_cov_40.289429.path2.1
         (250 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g02740.1                                                       352   2e-97

>Glyma15g02740.1 
          Length = 261

 Score =  352 bits (904), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 175/233 (75%), Positives = 189/233 (81%), Gaps = 9/233 (3%)

Query: 17  LRASWDTQEQQRLPYNPNAPRKLKKTNXXXXXXXXXXXXXXXXXXXRKEQYISDLLERTT 76
           +RASWDTQ  QRLPYNPNAPRKLK                      ++EQYISDLL+R T
Sbjct: 37  VRASWDTQ--QRLPYNPNAPRKLKNN-------IVATPTPTPPITRKREQYISDLLKRAT 87

Query: 77  PLPTIAHVEKEQDESYLGYERWLPTPPKVVKPRSVFNAATLAYIGDGIYELYARRHFLFP 136
           PLPTI H+E+ QDE+YLGYE+WLPTPPKVVKPRSVFNAATLAYIGD IYELYARRHFLFP
Sbjct: 88  PLPTIGHIEEVQDETYLGYEKWLPTPPKVVKPRSVFNAATLAYIGDCIYELYARRHFLFP 147

Query: 137 PLSIEEYNDRVMAVVRCEAQDALLQKLLNTDFLSDQERDVLRWGKNIXXXXXXXXXRAGA 196
           PLSIEEYNDRVMAVVRCEAQDALLQKLL ++FLSDQERDVLRWGKNI         RAGA
Sbjct: 148 PLSIEEYNDRVMAVVRCEAQDALLQKLLESNFLSDQERDVLRWGKNIVSSKTKTKKRAGA 207

Query: 197 AVYNRASSLETLVGYLYLTNVHRLEKLMVALGFSVDSSVPFNLEEAITGELKN 249
           AVYNRASSLETLVGYLYLTNV+RLEKLM+ LGFSVDSSV  N+EE + GEL N
Sbjct: 208 AVYNRASSLETLVGYLYLTNVNRLEKLMLELGFSVDSSVALNVEEIVAGELNN 260