Miyakogusa Predicted Gene

Lj3g3v0306890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0306890.1 tr|C7QN35|C7QN35_CYAP0 Mini-ribonuclease 3
OS=Cyanothece sp. (strain PCC 8802) GN=mrnC PE=3
SV=1,43.97,5e-19,RNase III domain-like,Ribonuclease III domain;
Ribonuclease_3,Ribonuclease III domain;
seg,NULL,NODE_27135_length_1192_cov_40.289429.path2.1
         (250 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g100220.2 | ribonuclease III domain protein | HC | chr2:43...   339   1e-93
Medtr2g100220.1 | ribonuclease III domain protein | HC | chr2:43...   332   1e-91

>Medtr2g100220.2 | ribonuclease III domain protein | HC |
           chr2:43032232-43027326 | 20130731
          Length = 254

 Score =  339 bits (870), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 173/235 (73%), Positives = 187/235 (79%), Gaps = 6/235 (2%)

Query: 17  LRASWDTQEQQRLPYNPNAPRKLKKTNXXXXXXXXXXXXXXXXXXXRKEQYISDLLERTT 76
           ++ASWDTQ  QRLPYN NAPRKL  T                    R E YISDLL+R T
Sbjct: 23  VKASWDTQ--QRLPYNRNAPRKL--TTQPPKPQSPSPTSSSPAPSTRNENYISDLLKRAT 78

Query: 77  PLPTIAHVE--KEQDESYLGYERWLPTPPKVVKPRSVFNAATLAYIGDGIYELYARRHFL 134
           PLPTI  +E  +E DE+YLGY+RWLPTPPKVVKPRSVFNAATLAYIGD IYELYARRHFL
Sbjct: 79  PLPTIGKIEEVQEHDETYLGYDRWLPTPPKVVKPRSVFNAATLAYIGDCIYELYARRHFL 138

Query: 135 FPPLSIEEYNDRVMAVVRCEAQDALLQKLLNTDFLSDQERDVLRWGKNIXXXXXXXXXRA 194
           FPPLSIEE+NDRVMAVVRCEAQDALLQKLL ++FLSDQERDVLRWGKNI         RA
Sbjct: 139 FPPLSIEEFNDRVMAVVRCEAQDALLQKLLISNFLSDQERDVLRWGKNIISSKTKTKRRA 198

Query: 195 GAAVYNRASSLETLVGYLYLTNVHRLEKLMVALGFSVDSSVPFNLEEAITGELKN 249
           GAAVYNRASSLETLVGYLYLTNV+RLEKLM+ LGFSVDSS+P NLEE ITGEL +
Sbjct: 199 GAAVYNRASSLETLVGYLYLTNVNRLEKLMLELGFSVDSSMPLNLEELITGELNS 253


>Medtr2g100220.1 | ribonuclease III domain protein | HC |
           chr2:43032181-43027394 | 20130731
          Length = 279

 Score =  332 bits (852), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 169/231 (73%), Positives = 182/231 (78%), Gaps = 6/231 (2%)

Query: 17  LRASWDTQEQQRLPYNPNAPRKLKKTNXXXXXXXXXXXXXXXXXXXRKEQYISDLLERTT 76
           ++ASWDTQ  QRLPYN NAPRKL  T                    R E YISDLL+R T
Sbjct: 23  VKASWDTQ--QRLPYNRNAPRKL--TTQPPKPQSPSPTSSSPAPSTRNENYISDLLKRAT 78

Query: 77  PLPTIAHVE--KEQDESYLGYERWLPTPPKVVKPRSVFNAATLAYIGDGIYELYARRHFL 134
           PLPTI  +E  +E DE+YLGY+RWLPTPPKVVKPRSVFNAATLAYIGD IYELYARRHFL
Sbjct: 79  PLPTIGKIEEVQEHDETYLGYDRWLPTPPKVVKPRSVFNAATLAYIGDCIYELYARRHFL 138

Query: 135 FPPLSIEEYNDRVMAVVRCEAQDALLQKLLNTDFLSDQERDVLRWGKNIXXXXXXXXXRA 194
           FPPLSIEE+NDRVMAVVRCEAQDALLQKLL ++FLSDQERDVLRWGKNI         RA
Sbjct: 139 FPPLSIEEFNDRVMAVVRCEAQDALLQKLLISNFLSDQERDVLRWGKNIISSKTKTKRRA 198

Query: 195 GAAVYNRASSLETLVGYLYLTNVHRLEKLMVALGFSVDSSVPFNLEEAITG 245
           GAAVYNRASSLETLVGYLYLTNV+RLEKLM+ LGFSVDSS+P NLEE I  
Sbjct: 199 GAAVYNRASSLETLVGYLYLTNVNRLEKLMLELGFSVDSSMPLNLEELIVS 249