Miyakogusa Predicted Gene

Lj2g3v3340800.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3340800.1 Non Characterized Hit- tr|I1LXL6|I1LXL6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.25280
PE,62.04,2e-17,seg,NULL; VQ,VQ,CUFF.40119.1
         (207 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g081500.1 | VQ motif protein | HC | chr3:36904409-36905059...    56   2e-08

>Medtr3g081500.1 | VQ motif protein | HC | chr3:36904409-36905059 |
           20130731
          Length = 216

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 5   MSNP--NDWLQFYHQNLPNQTLXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXNLGP-DG 60
           MS+P  N++ QFYHQN PNQT                                NLGP +G
Sbjct: 1   MSDPPSNEFFQFYHQNFPNQTPPYTSIATNTTPASTLPPESTMMNPSSPTSASNLGPSEG 60

Query: 61  RVSKPTXXXXXXXXXNPXXXXXXXXXXFRAMVQQFTGGPAAPFAPSST 108
           RVSKP           P          FRAMVQQFTGGP APFA ++T
Sbjct: 61  RVSKPIRRRSRASRRTPTTLLNTDTTNFRAMVQQFTGGPIAPFAAAAT 108