Miyakogusa Predicted Gene

Lj2g3v3335060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3335060.1 tr|G7K4U8|G7K4U8_MEDTR Cytochrome c oxidase
assembly protein COX15-like protein OS=Medicago
truncatu,77.07,0,CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX15,NULL;
seg,NULL; COX15-CtaA,Heme A synthase,CUFF.40021.1
         (221 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g096830.1 | cytochrome C oxidase assembly protein COX15 | ...   280   1e-75
Medtr3g095790.1 | cytochrome C oxidase assembly protein COX15 | ...   263   1e-70
Medtr5g096830.2 | cytochrome C oxidase assembly protein COX15 | ...   142   2e-34
Medtr5g096830.3 | cytochrome C oxidase assembly protein COX15 | ...   140   8e-34

>Medtr5g096830.1 | cytochrome C oxidase assembly protein COX15 | HC
           | chr5:42354450-42358871 | 20130731
          Length = 459

 Score =  280 bits (715), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 145/205 (70%), Positives = 159/205 (77%), Gaps = 6/205 (2%)

Query: 1   MFGRGTAFSILKRSREAA-IHKL--RATTTRPFSHPS-AQQSFKFLSPSIAS-HGFRAFR 55
           MFGRG   S LKRS+EA  I KL  R T T PFSHP+  QQSFKF +PS+ S H FR FR
Sbjct: 1   MFGRGAVGSFLKRSKEAFFIQKLVGRNTATVPFSHPAIEQQSFKFFNPSVVSTHFFRNFR 60

Query: 56  SLPIPKGHHVSFTRSFSKVVSAGAEHKEGLKLLVAGGAHAQKVVGVWLFGSAAWVFSMVX 115
           S PIPKGHHV FTR+FS VVSAGA+H+E LKLLV GG+ AQK VG+WLFGSAAWVFSMV 
Sbjct: 61  SHPIPKGHHVPFTRNFSTVVSAGAKHEE-LKLLVTGGSRAQKAVGIWLFGSAAWVFSMVV 119

Query: 116 XXXXXXXXXXXXXMTDWKFTGGLPPLSDEEWLKEFEKYKQSPEYKRVNKGMTIEEFKFIY 175
                        MTDWKFTG  PPL+DE WL+EFEKY+QSPEYKRVNKGM IEEFKFIY
Sbjct: 120 LGGLTRLTRSGLSMTDWKFTGEFPPLTDEAWLQEFEKYQQSPEYKRVNKGMKIEEFKFIY 179

Query: 176 WMEYAHRMWGRALGVIFALPYSYFL 200
           WMEY HRMWGRALG++F LPYSYFL
Sbjct: 180 WMEYGHRMWGRALGIMFVLPYSYFL 204


>Medtr3g095790.1 | cytochrome C oxidase assembly protein COX15 | HC
           | chr3:43769208-43772320 | 20130731
          Length = 499

 Score =  263 bits (671), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 139/207 (67%), Positives = 152/207 (73%), Gaps = 17/207 (8%)

Query: 1   MFGRGTAFSILKRSREAA-IHKLRATTTR----PFSHPSA--QQSFKFLSPSIASHGFRA 53
           MFGR    +ILKRS+E   IHKL    T     PFSHPS+  QQSFKF +PSI++H FR 
Sbjct: 48  MFGR----AILKRSKEICLIHKLTGRKTTTTTIPFSHPSSIQQQSFKFFNPSISTHFFRT 103

Query: 54  FRSLPIPKGHHVSFTRSFSKVVSAGAEHKEGLKLLVAGGAHAQKVVGVWLFGSAAWVFSM 113
           FRS   PKGH VS      K VSAGA H EGLKLLV GG+HAQKVVG+WLFGSAAWVF+M
Sbjct: 104 FRSHNTPKGHRVS------KTVSAGAIHNEGLKLLVTGGSHAQKVVGIWLFGSAAWVFTM 157

Query: 114 VXXXXXXXXXXXXXXMTDWKFTGGLPPLSDEEWLKEFEKYKQSPEYKRVNKGMTIEEFKF 173
           V              MTDWKFTG  PPLSDE WL+EFEKY+QSPEYKRVNKGM IEEFKF
Sbjct: 158 VILGGLTRLTRSGLSMTDWKFTGEFPPLSDEAWLQEFEKYQQSPEYKRVNKGMKIEEFKF 217

Query: 174 IYWMEYAHRMWGRALGVIFALPYSYFL 200
           IYWMEY HRMWGRALG++F LPYSYFL
Sbjct: 218 IYWMEYGHRMWGRALGLMFVLPYSYFL 244


>Medtr5g096830.2 | cytochrome C oxidase assembly protein COX15 | HC
           | chr5:42354422-42358768 | 20130731
          Length = 343

 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 66/72 (91%)

Query: 129 MTDWKFTGGLPPLSDEEWLKEFEKYKQSPEYKRVNKGMTIEEFKFIYWMEYAHRMWGRAL 188
           MTDWKFTG  PPL+DE WL+EFEKY+QSPEYKRVNKGM IEEFKFIYWMEY HRMWGRAL
Sbjct: 17  MTDWKFTGEFPPLTDEAWLQEFEKYQQSPEYKRVNKGMKIEEFKFIYWMEYGHRMWGRAL 76

Query: 189 GVIFALPYSYFL 200
           G++F LPYSYFL
Sbjct: 77  GIMFVLPYSYFL 88


>Medtr5g096830.3 | cytochrome C oxidase assembly protein COX15 | HC
           | chr5:42354422-42358017 | 20130731
          Length = 251

 Score =  140 bits (354), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 66/72 (91%)

Query: 129 MTDWKFTGGLPPLSDEEWLKEFEKYKQSPEYKRVNKGMTIEEFKFIYWMEYAHRMWGRAL 188
           MTDWKFTG  PPL+DE WL+EFEKY+QSPEYKRVNKGM IEEFKFIYWMEY HRMWGRAL
Sbjct: 17  MTDWKFTGEFPPLTDEAWLQEFEKYQQSPEYKRVNKGMKIEEFKFIYWMEYGHRMWGRAL 76

Query: 189 GVIFALPYSYFL 200
           G++F LPYSYFL
Sbjct: 77  GIMFVLPYSYFL 88