Miyakogusa Predicted Gene

Lj2g3v3335060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3335060.1 tr|G7K4U8|G7K4U8_MEDTR Cytochrome c oxidase
assembly protein COX15-like protein OS=Medicago
truncatu,77.07,0,CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX15,NULL;
seg,NULL; COX15-CtaA,Heme A synthase,CUFF.40021.1
         (221 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56090.1 | Symbols: COX15 | cytochrome c oxidase 15 | chr5:22...   209   1e-54

>AT5G56090.1 | Symbols: COX15 | cytochrome c oxidase 15 |
           chr5:22714634-22716605 FORWARD LENGTH=457
          Length = 457

 Score =  209 bits (532), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 130/196 (66%), Gaps = 6/196 (3%)

Query: 9   SILKRSREAAIHKLRATTT---RPF-SHPSAQQSFKFLSPSIASHGFRAFRSLPIPKGHH 64
           S LKR++EA     R  TT   R F S+ +A       S  +A + F   RSL   KG +
Sbjct: 7   SALKRNKEAFNGIARGFTTSSHRVFTSNITAASVTSASSSPLAGNSFYGLRSLL--KGQN 64

Query: 65  VSFTRSFSKVVSAGAEHKEGLKLLVAGGAHAQKVVGVWLFGSAAWVFSMVXXXXXXXXXX 124
            S  R  S V S  +E KEGLKLLV GG  AQK VG+WLFGSAAWVFSMV          
Sbjct: 65  ASMFRRMSTVASISSESKEGLKLLVTGGPQAQKWVGIWLFGSAAWVFSMVVLGGVTRLTR 124

Query: 125 XXXXMTDWKFTGGLPPLSDEEWLKEFEKYKQSPEYKRVNKGMTIEEFKFIYWMEYAHRMW 184
               MTDWKFTG  PPLSDE W KEFEKYKQSPEYKRVNKGM +E+FKFIYWMEYAHRMW
Sbjct: 125 SGLSMTDWKFTGEFPPLSDEAWAKEFEKYKQSPEYKRVNKGMNLEDFKFIYWMEYAHRMW 184

Query: 185 GRALGVIFALPYSYFL 200
           GR LG++FALP+SYFL
Sbjct: 185 GRGLGIMFALPFSYFL 200