Miyakogusa Predicted Gene

Lj2g3v3138170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3138170.1 tr|G7K3G7|G7K3G7_MEDTR DNA polymerase OS=Medicago
truncatula GN=MTR_5g092100 PE=3 SV=1,94.02,0,DNA/RNA polymerases,NULL;
DNA polymerase A domain,DNA-directed DNA polymerase, family A, palm
domain,CUFF.39787.1
         (202 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:188...   302   1e-82
AT3G20540.1 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:716...   294   2e-80
AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:716...   294   3e-80
AT4G32700.2 | Symbols:  | helicases;ATP-dependent helicases;nucl...    51   5e-07

>AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 |
           chr1:18839277-18844313 FORWARD LENGTH=1050
          Length = 1050

 Score =  302 bits (773), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 144/184 (78%), Positives = 164/184 (89%), Gaps = 2/184 (1%)

Query: 1   MLDAFKAGGDFHSRTAMNMYPYIREAVEKKHVLLEWHPQPGEDKPPVPLLKDAFGSERRK 60
           M++AFKAGGDFHSRTAMNMYP++REAVE   V+LEWHP+PGEDKPPVPLLKDAFGSERRK
Sbjct: 817 MMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDKPPVPLLKDAFGSERRK 876

Query: 61  AKMLNFSIAYGKTPVGLSRDWKVSVKEAKKTVDLWYNDRKEVLQWQEERKKEAREFHCVH 120
           AKMLNFSIAYGKT VGLSRDWKVS KEA++TVDLWYNDR+EV +WQE RKKEA E   V 
Sbjct: 877 AKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVL 936

Query: 121 TLLGRARRFPLMAQANTYQQGHIERAAINTPVQGSAADVAMCAMLQISNNKRLKELGWKL 180
           TLLGR+RRFP  A  +  Q+ HI+RAAINTPVQGSAADVAMCAML+IS N++LK+LGW+L
Sbjct: 937 TLLGRSRRFP--ASKSRAQRNHIQRAAINTPVQGSAADVAMCAMLEISINQQLKKLGWRL 994

Query: 181 LLQV 184
           LLQ+
Sbjct: 995 LLQI 998


>AT3G20540.1 | Symbols: POLGAMMA1 | polymerase gamma 1 |
           chr3:7168261-7173357 FORWARD LENGTH=1034
          Length = 1034

 Score =  294 bits (753), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 144/184 (78%), Positives = 160/184 (86%), Gaps = 2/184 (1%)

Query: 1   MLDAFKAGGDFHSRTAMNMYPYIREAVEKKHVLLEWHPQPGEDKPPVPLLKDAFGSERRK 60
           M +AF AGGDFHSRTAMNMYP+IREAVE   VLLEWHPQPG++KPPVPLLKDAF SERRK
Sbjct: 801 MKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRK 860

Query: 61  AKMLNFSIAYGKTPVGLSRDWKVSVKEAKKTVDLWYNDRKEVLQWQEERKKEAREFHCVH 120
           AKMLNFSIAYGKT +GLSRDWKVS +EA+ TV+LWYNDR+EV +WQE RKKEA +   V 
Sbjct: 861 AKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVL 920

Query: 121 TLLGRARRFPLMAQANTYQQGHIERAAINTPVQGSAADVAMCAMLQISNNKRLKELGWKL 180
           TLLGRAR+FP     +  Q+ HIERAAINTPVQGSAADVAMCAML+ISNN+RLKELGWKL
Sbjct: 921 TLLGRARKFP--EYRSRAQKNHIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGWKL 978

Query: 181 LLQV 184
           LLQV
Sbjct: 979 LLQV 982


>AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 |
           chr3:7168261-7173357 FORWARD LENGTH=1049
          Length = 1049

 Score =  294 bits (752), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 144/184 (78%), Positives = 160/184 (86%), Gaps = 2/184 (1%)

Query: 1   MLDAFKAGGDFHSRTAMNMYPYIREAVEKKHVLLEWHPQPGEDKPPVPLLKDAFGSERRK 60
           M +AF AGGDFHSRTAMNMYP+IREAVE   VLLEWHPQPG++KPPVPLLKDAF SERRK
Sbjct: 816 MKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFASERRK 875

Query: 61  AKMLNFSIAYGKTPVGLSRDWKVSVKEAKKTVDLWYNDRKEVLQWQEERKKEAREFHCVH 120
           AKMLNFSIAYGKT +GLSRDWKVS +EA+ TV+LWYNDR+EV +WQE RKKEA +   V 
Sbjct: 876 AKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVL 935

Query: 121 TLLGRARRFPLMAQANTYQQGHIERAAINTPVQGSAADVAMCAMLQISNNKRLKELGWKL 180
           TLLGRAR+FP     +  Q+ HIERAAINTPVQGSAADVAMCAML+ISNN+RLKELGWKL
Sbjct: 936 TLLGRARKFP--EYRSRAQKNHIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGWKL 993

Query: 181 LLQV 184
           LLQV
Sbjct: 994 LLQV 997


>AT4G32700.2 | Symbols:  | helicases;ATP-dependent helicases;nucleic
            acid binding;ATP binding;DNA-directed DNA polymerases;DNA
            binding | chr4:15767440-15779185 FORWARD LENGTH=2154
          Length = 2154

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 52/111 (46%)

Query: 57   ERRKAKMLNFSIAYGKTPVGLSRDWKVSVKEAKKTVDLWYNDRKEVLQWQEERKKEAREF 116
            +R + K L + I YG     L+   + +  EAK+ +  + +    V  W  E     +E 
Sbjct: 1957 DRDQTKRLIYGILYGMGANRLAEQLECTSDEAKEKIRSFKSSFPAVTSWLNETISFCQEK 2016

Query: 117  HCVHTLLGRARRFPLMAQANTYQQGHIERAAINTPVQGSAADVAMCAMLQI 167
              + TL GR R    +   N  ++   +R A+N+  QGSAAD+   AM+ I
Sbjct: 2017 GYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSAADIIKIAMINI 2067