Miyakogusa Predicted Gene

Lj2g3v2674940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2674940.1 tr|B9GGL3|B9GGL3_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_171742
PE=4,47.33,9e-18,seg,NULL,CUFF.39193.1
         (173 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g069580.1 | maternal effect embryo arrest protein | HC | c...   229   7e-61
Medtr4g064923.1 | maternal effect embryo arrest protein | HC | c...   139   2e-33
Medtr7g051210.1 | maternal effect embryo arrest protein | HC | c...   102   2e-22
Medtr1g020950.1 | transmembrane protein, putative | LC | chr1:61...    60   1e-09
Medtr7g112930.1 | hypothetical protein | LC | chr7:46469388-4647...    56   1e-08

>Medtr3g069580.1 | maternal effect embryo arrest protein | HC |
           chr3:31125677-31124472 | 20130731
          Length = 170

 Score =  229 bits (585), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 135/173 (78%), Gaps = 3/173 (1%)

Query: 1   MAISSSITSVHITALDAIVNVNSLFTLAVFIGLTWNPHDPENNLNSDPACAPTAAIAENL 60
           MA+SSSITSVHITALDAI NVNSLFTL VFIGL++NP+DP N LN++P+C PT AIAENL
Sbjct: 1   MALSSSITSVHITALDAITNVNSLFTLGVFIGLSFNPNDPSNTLNTNPSCIPTTAIAENL 60

Query: 61  VAFHVYXXXXXXXXXXIALALKQAIRLTRTSAYTPAVAHVNRSCLRLVMXXXXXXXXXXC 120
           VAFHVY          IALALKQ IRL+RTS++   VAHVN S LR+ M          C
Sbjct: 61  VAFHVYSFSSFLFSSLIALALKQTIRLSRTSSH---VAHVNGSVLRVGMLVSGIGSVLGC 117

Query: 121 LFLMLALVNVVQIKLGTLACGSSHAFAAIVPLFIFVPIALLIYVSVVFYAFTR 173
            FLMLALVNVVQIKLGT+ACGS HA AAIVPLF+FVPI+L +YV+VV YAFTR
Sbjct: 118 AFLMLALVNVVQIKLGTVACGSQHALAAIVPLFVFVPISLCVYVTVVVYAFTR 170


>Medtr4g064923.1 | maternal effect embryo arrest protein | HC |
           chr4:24267312-24266482 | 20130731
          Length = 187

 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/178 (46%), Positives = 103/178 (57%), Gaps = 14/178 (7%)

Query: 8   TSVHITALDAIVNVNSLFTLAVFIGLTWNPHDPENNLNSD-PACAPTAAIAENLVAFHVY 66
           TS+HI ALD IVNVNSLFTLA+F+G+T    +  N L  D PAC    +IAE+L+ +HVY
Sbjct: 12  TSIHIMALDGIVNVNSLFTLALFLGIT--STNTNNALVGDNPACIAGPSIAESLMKYHVY 69

Query: 67  XXXXXXXXXXIALALKQAIRLTRT-----------SAYTPAVAHVNRSCLRLVMXXXXXX 115
                     IALA+K  I +++              Y    A VN   LRL        
Sbjct: 70  SFSSFLFSSLIALAIKNVINISKGVDGAAARNYLVQGYAELAAEVNTVGLRLGTLVSAFG 129

Query: 116 XXXXCLFLMLALVNVVQIKLGTLACGSSHAFAAIVPLFIFVPIALLIYVSVVFYAFTR 173
               C FL++ALV++VQIKLGTLACGS +  AA+ PL   VP ALLIYV +V YAFTR
Sbjct: 130 SVFGCGFLVMALVDLVQIKLGTLACGSHYTLAAVAPLLFLVPTALLIYVILVLYAFTR 187


>Medtr7g051210.1 | maternal effect embryo arrest protein | HC |
           chr7:17931591-17930626 | 20130731
          Length = 196

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 2/164 (1%)

Query: 10  VHITALDAIVNVNSLFTLAVFIGLTWNPHDPENNLNSDPACAPTAAIAENLVAFHVYXXX 69
           VH+TALD +VNVNSLFT+AVF+GL+      + +L +  +C     +A+ L+ F V    
Sbjct: 33  VHVTALDGLVNVNSLFTIAVFVGLSLTT-PGQRSLENRSSCDAGIDVAKKLLVFEVVSFS 91

Query: 70  XXXXXXXIALALKQAIRLTRTSAYTPAV-AHVNRSCLRLVMXXXXXXXXXXCLFLMLALV 128
                  +A  LK A+ L  +     A  AH+N   LR  M          CLFLML++V
Sbjct: 92  FFLSSSLVAQGLKLALNLLNSKDVDEAFRAHINLKVLRWGMLGSALGSVMGCLFLMLSMV 151

Query: 129 NVVQIKLGTLACGSSHAFAAIVPLFIFVPIALLIYVSVVFYAFT 172
           NV++I+LG L+CGS  A  A+  + + V  AL++Y+S   YAFT
Sbjct: 152 NVIEIRLGMLSCGSKSAAHAVAVMAVLVTSALVVYISTAIYAFT 195


>Medtr1g020950.1 | transmembrane protein, putative | LC |
          chr1:6182637-6182930 | 20130731
          Length = 97

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 43/86 (50%)

Query: 14 ALDAIVNVNSLFTLAVFIGLTWNPHDPENNLNSDPACAPTAAIAENLVAFHVYXXXXXXX 73
          A+DAI+ +NSLFT   FIGL W  +DP NN+N+DP C    + A  LV F+ +       
Sbjct: 3  AVDAIIGLNSLFTTVTFIGLGWTQNDPSNNVNADPKCISNTSAATCLVIFNGFLFGYFLI 62

Query: 74 XXXIALALKQAIRLTRTSAYTPAVAH 99
             I   L+  + L   +     + H
Sbjct: 63 SNLIVYGLRVVLCLCTATTRRNHILH 88


>Medtr7g112930.1 | hypothetical protein | LC |
          chr7:46469388-46470044 | 20130731
          Length = 90

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 20 NVNSLFTLAVFIGLTWNPHDPENNLNSDPACAPTAAIAENLV 61
          NVNSLFTL +FI L++N +DP N LN +P+C PT  IAENLV
Sbjct: 33 NVNSLFTLGIFIDLSFNLNDPFNTLNINPSCIPTTDIAENLV 74