Miyakogusa Predicted Gene
- Lj2g3v2674940.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2674940.1 tr|B9GGL3|B9GGL3_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_171742
PE=4,47.33,9e-18,seg,NULL,CUFF.39193.1
(173 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05950.1 | Symbols: MEE60 | maternal effect embryo arrest 60 ... 198 1e-51
AT3G46890.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 113 5e-26
AT3G07510.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 112 2e-25
AT3G07510.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 112 2e-25
AT2G01580.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 84 5e-17
>AT5G05950.1 | Symbols: MEE60 | maternal effect embryo arrest 60 |
chr5:1788814-1789341 FORWARD LENGTH=175
Length = 175
Score = 198 bits (504), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 120/173 (69%), Gaps = 7/173 (4%)
Query: 8 TSVHITALDAIVNVNSLFTLAVFIGLTWNPHDPENNLNSDPACAPTAAIAENLVAFHVYX 67
TS+HITALD IVNVNSLFTLAVFIGL WNP DP+N+L +DP C PTA +AENLVAFHVY
Sbjct: 3 TSIHITALDGIVNVNSLFTLAVFIGLAWNPTDPDNSLVTDPNCVPTARMAENLVAFHVYS 62
Query: 68 XXXXXXXXXIALALKQAIRLTRTSAY------TPAVAHVNRSCLRLVMXXXXXXXXXXCL 121
IAL LKQA+RL S++ P V +VN++ LR M C
Sbjct: 63 FASFLFSSLIALGLKQAMRLNIASSFHISTRIDPVVYYVNKTALRFGMVTSGLGSVCGCG 122
Query: 122 FLMLALVNVVQIKLGTLACG-SSHAFAAIVPLFIFVPIALLIYVSVVFYAFTR 173
FLMLAL+NVVQIKLGTL CG S H +AA+VPL I VP AL IYVS++ YAFTR
Sbjct: 123 FLMLALINVVQIKLGTLGCGASGHTYAAVVPLVILVPSALFIYVSLMLYAFTR 175
>AT3G46890.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: maternal effect embryo arrest 60 (TAIR:AT5G05950.1);
Has 124 Blast hits to 124 proteins in 12 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:17266416-17267030 REVERSE LENGTH=204
Length = 204
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 98/184 (53%), Gaps = 20/184 (10%)
Query: 8 TSVHITALDAIVNVNSLFTLAVFIGLTWNPH--------DPENNLNSDPACAPTAAIAEN 59
T +H+TA+D IVNVNSLF+LA+F+GLT + + EN+ A A+AE
Sbjct: 19 TLIHVTAIDGIVNVNSLFSLALFLGLTTSGNITFPVSSSASENHHLRRCISAKGPALAER 78
Query: 60 LVAFHVYXXXXXXXXXXIALALKQAIRL-----------TRTSAYTPAVAHVNRSCLRLV 108
LV+ HVY IA++LKQAIR VN + LR+
Sbjct: 79 LVSSHVYSFSLFLFSSLIAMSLKQAIRTTTTTTNGNCLEEEARVLNAGEGRVNLAALRVG 138
Query: 109 MXXXXXXXXXXCLFLMLALVNVVQIKLGTLACGSS-HAFAAIVPLFIFVPIALLIYVSVV 167
+ C FL +ALV++VQIKLG L C S HA AAIVPL + VP AL+IYV +V
Sbjct: 139 IVASCVASVLGCGFLTMALVDLVQIKLGPLECKRSFHALAAIVPLVVLVPSALIIYVFLV 198
Query: 168 FYAF 171
YAF
Sbjct: 199 LYAF 202
>AT3G07510.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins
in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0;
Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:2393895-2394464 REVERSE
LENGTH=189
Length = 189
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 10 VHITALDAIVNVNSLFTLAVFIGLTWNPHDPENNLNSDPACAPTAAIAENLVAFHVYXXX 69
VH++ALD +VNVNSLFT+AVF+GL+ +++L +C +A +A+ L+ F V
Sbjct: 26 VHVSALDGLVNVNSLFTIAVFVGLSL-ATPGQHSLEQRSSCDASADVAKKLLVFEVVSFS 84
Query: 70 XXXXXXXIALALKQAIRLTRTSAYTPAV-AHVNRSCLRLVMXXXXXXXXXXCLFLMLALV 128
+A LK A+ L + AH+N LR M CLFLML++V
Sbjct: 85 FFLFSSLVAQGLKLALNLLNSKDVNEIFRAHINIKVLRWGMMASAVGSVMGCLFLMLSMV 144
Query: 129 NVVQIKLGTLACGSSHAFAAIVPLFIFVPIALLIYVSVVFYAF 171
NV+QI+LG L+CGS A A+ L V ALLIY+S YAF
Sbjct: 145 NVIQIRLGLLSCGSKSAAQAVATLVTLVSSALLIYISTAIYAF 187
>AT3G07510.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins
in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0;
Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:2393895-2394464 REVERSE
LENGTH=189
Length = 189
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 10 VHITALDAIVNVNSLFTLAVFIGLTWNPHDPENNLNSDPACAPTAAIAENLVAFHVYXXX 69
VH++ALD +VNVNSLFT+AVF+GL+ +++L +C +A +A+ L+ F V
Sbjct: 26 VHVSALDGLVNVNSLFTIAVFVGLSL-ATPGQHSLEQRSSCDASADVAKKLLVFEVVSFS 84
Query: 70 XXXXXXXIALALKQAIRLTRTSAYTPAV-AHVNRSCLRLVMXXXXXXXXXXCLFLMLALV 128
+A LK A+ L + AH+N LR M CLFLML++V
Sbjct: 85 FFLFSSLVAQGLKLALNLLNSKDVNEIFRAHINIKVLRWGMMASAVGSVMGCLFLMLSMV 144
Query: 129 NVVQIKLGTLACGSSHAFAAIVPLFIFVPIALLIYVSVVFYAF 171
NV+QI+LG L+CGS A A+ L V ALLIY+S YAF
Sbjct: 145 NVIQIRLGLLSCGSKSAAQAVATLVTLVSSALLIYISTAIYAF 187
>AT2G01580.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G07510.2); Has 129 Blast hits to 129 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:265181-265756 REVERSE
LENGTH=191
Length = 191
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 6/163 (3%)
Query: 14 ALDAIVNVNSLFTLAVFIGLTWN-PHDPENNLNSDPACAPTAAIAENLVAFHVYXXXXXX 72
ALD IV+ NSLFT+AVF+G++++ P D L C+ + +LV F V
Sbjct: 32 ALDGIVSANSLFTVAVFVGISFDQPSDL--TLTDRTECSAGRDVERDLVVFEVISFAFFL 89
Query: 73 XXXXIALALKQAIRLTRTSAYTPAV--AHVNRSCLRLVMXXXXXXXXXXCLFLMLALVNV 130
+A +K AI L S T V A++NR LR + C+FL+L++V+V
Sbjct: 90 FSSLVAQGMKLAINLL-NSKETDEVFKANINRDVLRFGVVGAAGGSILGCVFLLLSIVDV 148
Query: 131 VQIKLGTLACGSSHAFAAIVPLFIFVPIALLIYVSVVFYAFTR 173
+Q++LG L+CG++ A ++ L + V AL +Y+ VFY+F +
Sbjct: 149 IQLRLGLLSCGNALAIHTVLVLVVLVSSALSVYIFTVFYSFRK 191