Miyakogusa Predicted Gene

Lj2g3v2661850.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2661850.1 tr|G7K1P7|G7K1P7_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_5g078250 PE=4
SV=1,46.75,0.000000000005,DUF223,Domain of unknown function DUF223; no
description,Nucleic acid-binding, OB-fold; Nucleic acid,CUFF.39190.1
         (139 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g33200.1                                                        62   2e-10

>Glyma18g33200.1 
          Length = 126

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 12/81 (14%)

Query: 55  VRVLRLWEMFAVGDIAK---------PYAMNLVLIDSEGLKIQASINKNFISKFTSQLAE 105
           VRV+ LW    V D++          P +M +VL+DS+G ++  S+ + FI KF   L E
Sbjct: 2   VRVVHLW---MVSDVSNNKQTSSSKIPLSMEMVLVDSKGDRVHGSVKQTFIYKFDKALQE 58

Query: 106 GNVYKITYFSVGENGGAFRAT 126
           G  Y I +F V ENGG +R T
Sbjct: 59  GKWYSIQFFGVAENGGIYRTT 79