Miyakogusa Predicted Gene
- Lj2g3v2661850.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2661850.1 tr|G7K1P7|G7K1P7_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_5g078250 PE=4
SV=1,46.75,0.000000000005,DUF223,Domain of unknown function DUF223; no
description,Nucleic acid-binding, OB-fold; Nucleic acid,CUFF.39190.1
(139 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g036240.1 | replication factor-A carboxy-terminal domain p... 75 2e-14
Medtr8g059025.1 | animal RPA1 domain protein | LC | chr8:2054987... 75 2e-14
Medtr5g078250.1 | replication factor-A carboxy-terminal domain p... 73 8e-14
Medtr8g062030.1 | replication factor-A carboxy-terminal domain p... 72 1e-13
Medtr8g467450.1 | animal RPA1 domain protein | LC | chr8:2424111... 72 2e-13
Medtr3g056270.1 | replication factor-A carboxy-terminal domain p... 69 2e-12
Medtr3g056240.1 | DUF223 domain protein | HC | chr3:22396065-223... 66 8e-12
Medtr6g051890.1 | replication factor-A carboxy-terminal domain p... 65 2e-11
Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 | 20... 65 2e-11
Medtr2g048560.1 | replication factor-A carboxy-terminal domain p... 64 3e-11
Medtr1g075850.1 | replication factor-A carboxy-terminal domain p... 63 7e-11
Medtr8g036090.1 | animal RPA1 domain protein | HC | chr8:1327908... 62 1e-10
Medtr4g471610.1 | animal RPA1 domain protein | HC | chr4:2707183... 62 1e-10
Medtr3g078440.1 | animal RPA1 domain protein | HC | chr3:3535014... 62 1e-10
Medtr3g095950.1 | animal RPA1 domain protein | HC | chr3:4384560... 62 1e-10
Medtr8g096680.1 | animal RPA1 domain protein | HC | chr8:4055821... 62 1e-10
Medtr1g036740.1 | animal RPA1 domain protein | HC | chr1:1349734... 62 1e-10
Medtr6g039240.1 | animal RPA1 domain protein | LC | chr6:1418076... 62 2e-10
Medtr7g089660.1 | animal RPA1 domain protein | LC | chr7:3511416... 62 2e-10
Medtr1g094230.1 | animal RPA1 domain protein | LC | chr1:4243647... 62 2e-10
Medtr8g088810.1 | DUF223 domain protein | LC | chr8:36895897-368... 62 2e-10
Medtr8g463820.1 | animal RPA1 domain protein | LC | chr8:2251463... 62 2e-10
Medtr3g116750.1 | animal RPA1 domain protein | HC | chr3:5461096... 61 3e-10
Medtr8g479260.1 | replication factor-A carboxy-terminal domain p... 61 4e-10
Medtr2g008650.1 | replication factor-A carboxy-terminal domain p... 61 4e-10
Medtr3g044760.1 | DUF223 domain protein | LC | chr3:14435139-144... 59 1e-09
Medtr2g032570.1 | animal RPA1 domain protein | LC | chr2:1225599... 59 1e-09
Medtr7g093810.1 | animal RPA1 domain protein | HC | chr7:3731542... 59 1e-09
Medtr1788s0010.1 | animal RPA1 domain protein | LC | scaffold178... 59 2e-09
Medtr5g055160.1 | animal RPA1 domain protein | LC | chr5:2272064... 59 2e-09
Medtr8g469510.1 | PIF1 DNA helicase/replication A1-like protein,... 57 4e-09
Medtr2g054710.1 | animal RPA1 domain protein | LC | chr2:2336383... 57 4e-09
Medtr6g465570.1 | animal RPA1 domain protein | LC | chr6:2333006... 57 5e-09
Medtr5g085220.1 | animal RPA1 domain protein | LC | chr5:3678902... 55 2e-08
Medtr3g032190.1 | DUF223 domain protein | LC | chr3:10122022-101... 54 4e-08
Medtr5g060920.1 | DUF223 domain protein | LC | chr5:25336865-253... 53 1e-07
Medtr8g062060.1 | DUF223 domain protein | LC | chr8:25911934-259... 52 2e-07
Medtr4g028320.1 | animal RPA1 domain protein | LC | chr4:9767872... 52 2e-07
Medtr5g070620.1 | hypothetical protein | HC | chr5:29909066-2990... 51 3e-07
Medtr5g032920.1 | PIF1 DNA helicase/replication A1-like protein,... 50 6e-07
Medtr7g117425.1 | animal RPA1 domain protein | LC | chr7:4855438... 50 7e-07
Medtr6g039230.1 | PIF1 DNA helicase/replication A1-like protein,... 49 1e-06
Medtr1g085690.1 | DUF223 domain protein | HC | chr1:38294818-382... 49 1e-06
Medtr1g052715.1 | DUF223 domain protein | LC | chr1:21677037-216... 49 2e-06
Medtr6g069460.1 | DUF223 domain protein | LC | chr6:25000534-250... 48 2e-06
Medtr0032s0020.1 | PIF1-like helicase | LC | scaffold0032:18195-... 48 3e-06
Medtr6g069230.1 | animal RPA1 domain protein | LC | chr6:2491560... 47 4e-06
Medtr1g082860.1 | DUF223 domain protein | HC | chr1:36868467-368... 47 4e-06
Medtr1g011490.1 | DUF223 domain protein | HC | chr1:2049055-2047... 47 6e-06
>Medtr4g036240.1 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830642-11833873 | 20130731
Length = 560
Score = 75.1 bits (183), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
AW IK RV+RLW++ P+++ +VL+DSEG +I ASI K + KF S++ EG VY
Sbjct: 17 AWNIKARVVRLWKVSDFNRNTLPFSIEMVLMDSEGSRIHASIKKTLLYKFQSEIREGKVY 76
Query: 110 KITYFSVGENGGAFRAT 126
V NGG+++ T
Sbjct: 77 SFENMGVAANGGSYKTT 93
>Medtr8g059025.1 | animal RPA1 domain protein | LC |
chr8:20549873-20550376 | 20130731
Length = 138
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
W+IKVR+LRLWE+ + + ++ +VLID +G KI AS+ K + F +L+EG VY
Sbjct: 17 GWRIKVRILRLWEVPTLLRPDQTNSLEMVLIDDKGAKIHASVRKQLLYVFQPKLSEGKVY 76
Query: 110 KITYFSVGENGGAFRAT 126
K+++FSV + G++R T
Sbjct: 77 KMSFFSVAPSVGSYRTT 93
>Medtr5g078250.1 | replication factor-A carboxy-terminal domain
protein | LC | chr5:33436158-33438920 | 20130731
Length = 517
Score = 73.2 bits (178), Expect = 8e-14, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
WKIKVRVLRLWE+ + + ++ +VLID G KI AS+ K F S+L+EG VY
Sbjct: 17 GWKIKVRVLRLWEVPSFLKPDQTNSLEMVLIDEMGTKIHASVRKQLFYVFQSKLSEGKVY 76
Query: 110 KITYFSVGENGGAFRAT 126
+++ FSV + G++R T
Sbjct: 77 EMSCFSVAPSVGSYRTT 93
>Medtr8g062030.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:25901653-25904109 | 20130731
Length = 575
Score = 72.4 bits (176), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 50/77 (64%)
Query: 51 WKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYK 110
W+I+VRV+R+WE+ + ++ +VL+D G+KIQA + K I F +L EG VY
Sbjct: 18 WRIRVRVVRMWEVPTFLKPNQANSLEMVLLDQMGVKIQAIVRKQLIYVFQKRLREGEVYN 77
Query: 111 ITYFSVGENGGAFRATS 127
I+YFSV + G++RA +
Sbjct: 78 ISYFSVAPSTGSYRAAT 94
>Medtr8g467450.1 | animal RPA1 domain protein | LC |
chr8:24241111-24240561 | 20130731
Length = 142
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
W+ KV++LR+WE+ A ++ +P ++ +VLID +G KI A++ K + F +LAE + Y
Sbjct: 17 GWRFKVKILRMWEVPAFLNLDQPNSLEMVLIDEKGDKIHATVRKQLLYVFQKKLAEEDAY 76
Query: 110 KITYFSVGENGGAFRATS 127
K+ YFS+ N G + T+
Sbjct: 77 KMFYFSIAPNVGYYHTTT 94
>Medtr3g056270.1 | replication factor-A carboxy-terminal domain
protein | HC | chr3:22409504-22413525 | 20130731
Length = 719
Score = 68.6 bits (166), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
A IK RV+RLW++ P+++ +VL+DSEG +I ASI K KF S++ EG VY
Sbjct: 17 AGNIKARVVRLWKLSDFNRNTLPFSIEMVLMDSEGSRIHASIKKTLWYKFQSEIREGKVY 76
Query: 110 KITYFSVGENGGAFRAT 126
V NGG+++ T
Sbjct: 77 SFENMGVAANGGSYKTT 93
>Medtr3g056240.1 | DUF223 domain protein | HC |
chr3:22396065-22393475 | 20130731
Length = 323
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
A IK RV+RLW++ P+++ +VL+DSEG +I ASI K KF S++ EG VY
Sbjct: 17 AGNIKARVVRLWKLSDFNRNTLPFSIEMVLMDSEGSRIHASIKKTLWYKFQSEIREGKVY 76
Query: 110 KITYFSVGENGGAFRAT 126
V NGG+++ T
Sbjct: 77 SFENMGVAANGGSYKTT 93
>Medtr6g051890.1 | replication factor-A carboxy-terminal domain
protein | HC | chr6:18071124-18068908 | 20130731
Length = 399
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 39 ERNFRHLCMT----SAWKIKVRVLRLWEMFAVGDIAKPYAMN---LVLIDSEGLKIQASI 91
+ NF LC AW+I++R RLW + KP +N +VLID +G KI ++
Sbjct: 6 DSNFDALCHVLLGREAWRIEMRTARLWTIHT---FVKPDQINSVEMVLIDDKGGKIHVTV 62
Query: 92 NKNFISKFTSQLAEGNVYKITYFSVGENGGAFRAT 126
K + F L +G VYKI YFSV + G++R+T
Sbjct: 63 RKQLLYLFQHLLVKGKVYKIAYFSVAPSVGSYRST 97
>Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 |
20130731
Length = 665
Score = 65.1 bits (157), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
AW+ VRV+RLWE+ I +VLID G+KI A+I K + F +L EG VY
Sbjct: 19 AWRFVVRVIRLWEVPLFTSI------EMVLIDQNGVKIHATIPKQLMYLFQHKLIEGKVY 72
Query: 110 KITYFSVGENGGAFRATSMSSRYLL 134
K++ F+V N GA+R T + + +
Sbjct: 73 KLSNFTVLLNSGAYRTTHHTYKLIF 97
>Medtr2g048560.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:21416239-21412307 | 20130731
Length = 549
Score = 64.3 bits (155), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 51 WKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYK 110
W I+VRV+RLW + + PY++ +VL+D++G +I AS+ + I K+ +L E V+
Sbjct: 18 WNIRVRVVRLWFVRDMKKDQLPYSLEMVLMDNKGDRINASVRRTLIYKYEKELREDRVFS 77
Query: 111 ITYFSVGENGGAFR 124
I FSV N G++R
Sbjct: 78 IGNFSVASNVGSYR 91
>Medtr1g075850.1 | replication factor-A carboxy-terminal domain
protein | LC | chr1:33615520-33612872 | 20130731
Length = 528
Score = 63.2 bits (152), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
WKIKVRVLRLWE+ A P N V + G KI A + K + F S+L+EG VY
Sbjct: 17 GWKIKVRVLRLWEVPA---FLNPDQTNSVEM---GTKIHAGVRKQLLYVFQSKLSEGKVY 70
Query: 110 KITYFSVGENGGAFRATS 127
+++ FSV + G++R TS
Sbjct: 71 QMSCFSVAPSVGSYRTTS 88
>Medtr8g036090.1 | animal RPA1 domain protein | HC |
chr8:13279086-13278300 | 20130731
Length = 172
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M LVL+D +G +I ASI + I KF QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFSMELVLMDRKGDRIGASIRRTLIYKFKEQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F+V N G++R +
Sbjct: 77 TISSFNVASNSGSYRPS 93
>Medtr4g471610.1 | animal RPA1 domain protein | HC |
chr4:27071837-27072623 | 20130731
Length = 172
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M LVL+D +G +I ASI + I KF QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFSMELVLMDRKGDRIGASIRRTLIYKFKEQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F+V N G++R +
Sbjct: 77 TISSFNVASNSGSYRPS 93
>Medtr3g078440.1 | animal RPA1 domain protein | HC |
chr3:35350146-35349360 | 20130731
Length = 172
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M LVL+D +G +I ASI + I KF QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFSMELVLMDRKGDRIGASIRRTLIYKFKEQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F+V N G++R +
Sbjct: 77 TISSFNVASNSGSYRPS 93
>Medtr3g095950.1 | animal RPA1 domain protein | HC |
chr3:43845609-43846394 | 20130731
Length = 172
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M LVLID +G +I ASI + I KF +QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFSMELVLIDRKGDRIGASIRRTLIYKFKNQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F+V N G++R +
Sbjct: 77 TISSFNVASNIGSYRPS 93
>Medtr8g096680.1 | animal RPA1 domain protein | HC |
chr8:40558216-40559002 | 20130731
Length = 172
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M LVL+D +G +I ASI + I KF QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFSMELVLMDRKGDRIGASIRRTLIYKFKEQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F V N G++R +
Sbjct: 77 TISSFDVASNSGSYRPS 93
>Medtr1g036740.1 | animal RPA1 domain protein | HC |
chr1:13497342-13498128 | 20130731
Length = 172
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M LVL+D +G +I ASI + I KF QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFSMELVLMDRKGDRIGASIRRTLIYKFKEQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F V N G++R +
Sbjct: 77 TISSFDVASNSGSYRPS 93
>Medtr6g039240.1 | animal RPA1 domain protein | LC |
chr6:14180761-14182238 | 20130731
Length = 289
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M LVL+D +G +I ASI + I KF QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFSMELVLMDRKGDRIGASIRRTLIYKFKEQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F+V N G++R +
Sbjct: 77 TISSFNVASNSGSYRPS 93
>Medtr7g089660.1 | animal RPA1 domain protein | LC |
chr7:35114160-35121568 | 20130731
Length = 236
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M LVLID +G +I ASI + I KF +QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQNYKNKKLPFSMELVLIDRKGDRIGASIRRTLIYKFKNQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F+V N G++R +
Sbjct: 77 TISSFNVASNIGSYRPS 93
>Medtr1g094230.1 | animal RPA1 domain protein | LC |
chr1:42436471-42437983 | 20130731
Length = 303
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M LVL+D +G +I ASI + I KF QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFSMELVLMDRKGDRIGASIRRTLIYKFKEQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F+V N G++R +
Sbjct: 77 TISSFNVASNSGSYRPS 93
>Medtr8g088810.1 | DUF223 domain protein | LC |
chr8:36895897-36893498 | 20130731
Length = 306
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M VLID +G +I ASI + I KF QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFSMEFVLIDRKGDQIGASIRRTLIYKFKEQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F V N G++R +
Sbjct: 77 TISSFDVASNSGSYRPS 93
>Medtr8g463820.1 | animal RPA1 domain protein | LC |
chr8:22514633-22516142 | 20130731
Length = 283
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M LVL+D +G +I ASI + I KF QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFSMELVLMDRKGDRIGASIRRTLIYKFKEQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F V N G++R +
Sbjct: 77 TISSFDVASNSGSYRPS 93
>Medtr3g116750.1 | animal RPA1 domain protein | HC |
chr3:54610965-54611750 | 20130731
Length = 172
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV R W + P++M LVLID +G +I ASI + I KF +QL EG V+
Sbjct: 17 SWTLVVRVARAWFGQDYKNKKLPFSMELVLIDRKGDRIGASIRRTLIYKFKNQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F+V N G++R +
Sbjct: 77 TISSFNVASNIGSYRPS 93
>Medtr8g479260.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:33777150-33779789 | 20130731
Length = 555
Score = 60.8 bits (146), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 51 WKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYK 110
W +K +++RLW++ P+++ +V++D G +I AS+ K I KF + L EG +
Sbjct: 20 WNLKGKIIRLWQVSDFNGNRMPFSIEMVILDEAGDRIHASLKKTLIYKFRNDLFEGKCFS 79
Query: 111 ITYFSVGENGGAFRATSMSSR 131
V NGG +R T + +
Sbjct: 80 FENMGVANNGGGYRTTKHTYK 100
>Medtr2g008650.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:1569207-1566568 | 20130731
Length = 555
Score = 60.8 bits (146), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 51 WKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYK 110
W +K +++RLW++ P+++ +V++D G +I AS+ K I KF + L EG +
Sbjct: 20 WNLKGKIIRLWQVSDFNGNRMPFSIEMVILDEAGDRIHASLKKTLIYKFRNDLFEGKCFS 79
Query: 111 ITYFSVGENGGAFRATSMSSR 131
V NGG +R T + +
Sbjct: 80 FENMGVANNGGGYRTTKHTYK 100
>Medtr3g044760.1 | DUF223 domain protein | LC |
chr3:14435139-14437639 | 20130731
Length = 444
Score = 59.3 bits (142), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
AW I+VRV+RLW + + + M +VL+D +G +IQA+I + + +F + E VY
Sbjct: 17 AWNIRVRVVRLWRIMSSLVRGRVIFMEMVLLDQDGNRIQATIPPDCVDRFQNTFHENRVY 76
Query: 110 KITYFSVGENGGAFRATSMSSRYLLME 136
+ F V N + R TS + R L E
Sbjct: 77 MFSNFKVLPNDRSTRVTSHNHRLKLWE 103
>Medtr2g032570.1 | animal RPA1 domain protein | LC |
chr2:12255994-12255202 | 20130731
Length = 174
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P+ M LVL++ +G +I ASI + I KF QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFFMELVLMNRKGDRIGASIRRTLIYKFKEQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F+V N G++R +
Sbjct: 77 TISSFNVASNSGSYRPS 93
>Medtr7g093810.1 | animal RPA1 domain protein | HC |
chr7:37315424-37314639 | 20130731
Length = 172
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M LVLID +G +I ASI + I KF +QL E V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFSMELVLIDRKGDRIGASIRRTLIYKFKNQLQERMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F+V N G++R +
Sbjct: 77 TISSFNVASNIGSYRPS 93
>Medtr1788s0010.1 | animal RPA1 domain protein | LC |
scaffold1788:754-253 | 20130731
Length = 139
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M LVL+D +G +I ASI + I K QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFSMELVLMDRKGDRIGASIRRTLIYKSKEQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F V N G++R +
Sbjct: 77 TISSFDVASNSGSYRPS 93
>Medtr5g055160.1 | animal RPA1 domain protein | LC |
chr5:22720640-22718177 | 20130731
Length = 270
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P+ M LVL++ +G +I ASI + I KF QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFFMELVLMNRKGDRIGASIRRTLIYKFKEQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F+V N G++R +
Sbjct: 77 TISSFNVASNNGSYRPS 93
>Medtr8g469510.1 | PIF1 DNA helicase/replication A1-like protein,
putative | LC | chr8:25279627-25279236 | 20130731
Length = 93
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 46/75 (61%)
Query: 52 KIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYKI 111
++ VR++R+WE + ++ +VL+D +G KI A+I K + ++L EG +YK+
Sbjct: 2 EVLVRIVRMWEAPTFLKHDQTNSLEMVLVDEKGCKIHATIQKQLLYLIQAKLIEGKIYKM 61
Query: 112 TYFSVGENGGAFRAT 126
++FSV + G++ T
Sbjct: 62 SFFSVAHSSGSYCTT 76
>Medtr2g054710.1 | animal RPA1 domain protein | LC |
chr2:23363838-23365033 | 20130731
Length = 271
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 51 WKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYK 110
W +K +++RLW++ P+++ +V++D G +I AS+ K I KF + L EG +
Sbjct: 20 WNLKGKIIRLWQVSDFNGNMMPFSIEMVILDEAGDRIHASLKKTLIYKFRNDLFEGKCFS 79
Query: 111 ITYFSVGENGGAFRAT 126
V NGG +R T
Sbjct: 80 FENMGVTNNGGGYRTT 95
>Medtr6g465570.1 | animal RPA1 domain protein | LC |
chr6:23330063-23328693 | 20130731
Length = 172
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 46 CMTSAWKIKVRVLRLWEMFAVGDIAKPY---AMNLVLIDSEGLKIQASINKNFISKFTSQ 102
C + + VRV+ LW +V D P +++++L+D + KI AS+ KN I F Q
Sbjct: 9 CGNTDLALTVRVIHLW---SVPDRTNPVVDGSLHMLLLDEKCGKIHASVRKNLIHLFKDQ 65
Query: 103 LAEGNVYKITYFSVGENGGAFRATSMSSRYLLMEG 137
+ EG+ Y I F VG N A++ T + M G
Sbjct: 66 IDEGSAYVIESFMVGSNDHAYKTTGHKYKLNFMGG 100
>Medtr5g085220.1 | animal RPA1 domain protein | LC |
chr5:36789021-36788235 | 20130731
Length = 172
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+ W + ++M+LVLID +G +I ASI + I KF QL EG V+
Sbjct: 17 SWTLVVRVVPAWFGKDYKNKKLSFSMDLVLIDRKGDRIGASIRRILIYKFKEQLQEGMVF 76
Query: 110 KITYFSVGENGGAFRAT 126
I+ F V N G++R +
Sbjct: 77 TISSFIVASNSGSYRPS 93
>Medtr3g032190.1 | DUF223 domain protein | LC |
chr3:10122022-10121616 | 20130731
Length = 107
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M VLID +G +I ASI + I KF QL EG V+
Sbjct: 17 SWTLVVRVVRAWFGQDYKNKKLPFSMEFVLIDQKGDQIGASIRRTLIYKFKEQLQEGMVF 76
Query: 110 KITYFSVG 117
I+ F V
Sbjct: 77 TISSFDVA 84
>Medtr5g060920.1 | DUF223 domain protein | LC |
chr5:25336865-25337277 | 20130731
Length = 109
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W + VRV+R W + P++M VL+D +G +I ASI + I KF QL EG V+
Sbjct: 19 SWTLVVRVVRAWFGQDYKNKKLPFSMEFVLMDQKGDQIGASIRRTLIYKFKKQLQEGMVF 78
Query: 110 KITYFSVG 117
I+ F V
Sbjct: 79 TISSFDVA 86
>Medtr8g062060.1 | DUF223 domain protein | LC |
chr8:25911934-25914219 | 20130731
Length = 530
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 53 IKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYKIT 112
I VRVLRLW++ + + + L+L+D EG ++ A++ + KF L E VY IT
Sbjct: 20 IMVRVLRLWDVESTLMPGRVNSSELLLMDIEGYRMHATVPPFCVEKFRHMLVENRVYIIT 79
Query: 113 YFSVGENGGAFRATSMSSRYLLME 136
FSV N F +TS + R + +
Sbjct: 80 MFSVLPNLDEFMSTSSAYRIVFHQ 103
>Medtr4g028320.1 | animal RPA1 domain protein | LC |
chr4:9767872-9767142 | 20130731
Length = 153
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 55 VRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYKITYF 114
VRV+R W + + ++M LVL+D +G +I ASI + I K QL EG V+ I+ F
Sbjct: 3 VRVVRAWFVQDYKNKKLSFSMELVLMDRKGDRIGASIRRTLIYKSKEQLQEGMVFTISSF 62
Query: 115 SVGENGGAFRAT 126
V N G++R +
Sbjct: 63 DVASNSGSYRPS 74
>Medtr5g070620.1 | hypothetical protein | HC |
chr5:29909066-29908660 | 20130731
Length = 104
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W+ VRV+RLWE A + ++ +VL+D +G++I A+I K + F ++L EG VY
Sbjct: 42 SWRFIVRVVRLWEAPAFLHPEQVNSVEMVLVDEKGVRIHATIRKQLLYLFHNKLVEGVVY 101
Query: 110 KIT 112
K+
Sbjct: 102 KLP 104
>Medtr5g032920.1 | PIF1 DNA helicase/replication A1-like protein,
putative | LC | chr5:14188599-14189420 | 20130731
Length = 96
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 53 IKVRVLRLWEMFAVGDIAK---PYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
I VRV+RLW V DI K P+++ +VL+D++G +I AS+ + I K+ +L+E V
Sbjct: 20 IIVRVVRLW---FVRDIKKDQFPFSLEMVLMDNKGDRINASVRRTLIYKYEKELSEDRVI 76
Query: 110 KITYFSVGENGGAFRA 125
I F N G+++
Sbjct: 77 SIGNFGFASNVGSYKT 92
>Medtr7g117425.1 | animal RPA1 domain protein | LC |
chr7:48554380-48555674 | 20130731
Length = 258
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVY 109
+W I VR++ W + V A P+++++ G KI A++ + I KF L EG VY
Sbjct: 17 SWSIVVRIVCAWFVRDVNRDAHPFSLDM------GNKIHATVRRTLIYKFEKDLQEGKVY 70
Query: 110 KITYFSVGENGGAFRAT 126
++ F V N G++R T
Sbjct: 71 SMSCFGVAANLGSYRTT 87
>Medtr6g039230.1 | PIF1 DNA helicase/replication A1-like protein,
putative | LC | chr6:14176225-14176548 | 20130731
Length = 79
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 50 AWKIKVRVLRLWEMFAVGDIAK--PYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGN 107
+W + VRV+R W F + K P++M LVL+D +G +I ASI + I KF QL EG
Sbjct: 17 SWTLVVRVVRAW--FGQNNKNKKLPFSMELVLMDRKGDRIGASIRRTLIYKFKEQLQEGM 74
Query: 108 VYKI 111
V+ I
Sbjct: 75 VFTI 78
>Medtr1g085690.1 | DUF223 domain protein | HC |
chr1:38294818-38296141 | 20130731
Length = 233
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 75 MNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYKITYFSVGENGGAFRAT 126
M+LVL+D +G +I ASI + I KF QL EG V+ I+ F+V N G++R +
Sbjct: 1 MDLVLMDRKGDRIGASIRRKLIYKFKEQLQEGMVFTISSFNVASNSGSYRPS 52
>Medtr1g052715.1 | DUF223 domain protein | LC |
chr1:21677037-21675057 | 20130731
Length = 334
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 75 MNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYKITYFSVGENGGAFRATSMSSRYLL 134
M+++L+D++G+ I AS+ K+ + +F Q +G++Y I V +N F+ T + L
Sbjct: 1 MHMILLDNQGVTIHASVRKHLLPQFKDQFEKGSIYVIEKLMVAQNDPTFKTTPHKYKLNL 60
Query: 135 MEG 137
M G
Sbjct: 61 MGG 63
>Medtr6g069460.1 | DUF223 domain protein | LC |
chr6:25000534-25001977 | 20130731
Length = 145
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 37 MVERNFRHLCMTSAWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFI 96
+VE +F T K+ VRV +W + MN++L+D++G +I A++ K +
Sbjct: 42 IVEYDFE----TKNLKMCVRVAHIWLIPEKKVPTNIIFMNMLLVDAKGGRIHATVRKELV 97
Query: 97 SKFTSQLAEGNVYKITYFSVGENGGAFRATSMSSR 131
+KF S + +G Y+++ VG N G R T R
Sbjct: 98 AKFRSMVEKGGTYELSNAIVGFNEGDVRETEKEGR 132
>Medtr0032s0020.1 | PIF1-like helicase | LC |
scaffold0032:18195-20915 | 20130731
Length = 586
Score = 48.1 bits (113), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 53 IKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYKIT 112
I VRVLRLW++ + + + L+L+D EG ++ A++ + KF L E VY IT
Sbjct: 20 IMVRVLRLWDVESTLMPGRVNSSELLLMDIEGYRMHATVPPFCVEKFRHMLVENRVYIIT 79
Query: 113 YFSVGENGGAFRATS 127
F V N F +TS
Sbjct: 80 MFFVLPNFDEFMSTS 94
>Medtr6g069230.1 | animal RPA1 domain protein | LC |
chr6:24915605-24909459 | 20130731
Length = 356
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 51 WKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYK 110
W +KVR+LR+W + + K ++ L+L+D EG KIQAS+ I F L E Y
Sbjct: 114 WSVKVRLLRMWNVESSIVAGKVNSLELILLDREGNKIQASVPLQCIEVFNHILEENRGYV 173
Query: 111 ITYFSVGENGGAFRATSMSSRYLL 134
+ F V N T S R +
Sbjct: 174 FSDFHVVSNIADMMTTHNSHRLIF 197
>Medtr1g082860.1 | DUF223 domain protein | HC |
chr1:36868467-36866911 | 20130731
Length = 274
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 52 KIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYKI 111
K+ VRV +W + A MN++L+D +G +I A+ K+ ++KF S + EG Y++
Sbjct: 19 KMCVRVAHIWLIREKKVPASIIFMNMLLVDEKGGRIHATARKDLVAKFRSMVQEGGTYQL 78
Query: 112 TYFSVGENGGAFRATSMSSRYLLME 136
VG N ++ TS + +M
Sbjct: 79 ENAIVGFNESPYKVTSHKHKLSMMH 103
>Medtr1g011490.1 | DUF223 domain protein | HC | chr1:2049055-2047500
| 20130731
Length = 317
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 52 KIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYKI 111
K+ VRV +W + A MN++L+D +G +I A+ K+ ++KF S + EG Y++
Sbjct: 19 KMCVRVAHIWLIREKKVPASIIFMNMLLVDEKGGRIHATARKDLVAKFRSMVQEGGTYQL 78
Query: 112 TYFSVGENGGAFRATSMSSRYLLME 136
VG N ++ TS + +M
Sbjct: 79 ENAIVGFNESPYKVTSHKHKLSMMH 103