Miyakogusa Predicted Gene

Lj2g3v2661850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2661850.1 tr|G7K1P7|G7K1P7_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_5g078250 PE=4
SV=1,46.75,0.000000000005,DUF223,Domain of unknown function DUF223; no
description,Nucleic acid-binding, OB-fold; Nucleic acid,CUFF.39190.1
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    68   2e-12
AT3G32260.1 | Symbols:  | Nucleic acid-binding proteins superfam...    48   2e-06

>AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr2:2098253-2100867 REVERSE LENGTH=532
          Length = 532

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 48/79 (60%)

Query: 49  SAWKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNV 108
           S  K+KVR+ RLW             ++L+L+D +G +IQASI    +SKF  +L EG+ 
Sbjct: 16  STCKVKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRSQLLSKFQEKLEEGDC 75

Query: 109 YKITYFSVGENGGAFRATS 127
           Y I  F + +NGG++RA+S
Sbjct: 76  YMIMNFEISDNGGSYRASS 94


>AT3G32260.1 | Symbols:  | Nucleic acid-binding proteins superfamily
           | chr3:13219168-13221456 FORWARD LENGTH=309
          Length = 309

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 8/65 (12%)

Query: 51  WKIKVRVLRLWEMFAVGDIAKPYAMNLVLIDSEGLKIQASINKNFISKFTSQLAEGNVYK 110
           +KIK RV+RLW +F         ++ +VL+D EG +I ASI +  + +F  QL  G    
Sbjct: 22  YKIKKRVVRLWRLFK--------SIEMVLVDGEGTRIHASIEEGLVKRFQHQLVNGESRI 73

Query: 111 ITYFS 115
           I  FS
Sbjct: 74  IDTFS 78