Miyakogusa Predicted Gene

Lj2g3v2245110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2245110.1 tr|G7K6B3|G7K6B3_MEDTR Josephin-like protein
OS=Medicago truncatula GN=MTR_5g069880 PE=4
SV=1,78.92,0,JOSEPHIN,Machado-Joseph disease protein MJD; SUBFAMILY
NOT NAMED,NULL; JOSEPHIN 1, 2,NULL; Josephin,,CUFF.38754.1
         (183 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g069880.1 | josephin-2 protein | HC | chr5:29622784-296241...   308   1e-84
Medtr4g014710.1 | ataxin-3 protein | HC | chr4:4201230-4196019 |...    53   2e-07

>Medtr5g069880.1 | josephin-2 protein | HC | chr5:29622784-29624103
           | 20130731
          Length = 185

 Score =  308 bits (790), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 146/185 (78%), Positives = 160/185 (86%), Gaps = 2/185 (1%)

Query: 1   MATGNSHVYHERQRLQFCLLHSLNSLFQQKDAFTRTTLNAISERLALDESSN--ETWTPL 58
           M+T  SHVYHERQRLQFCL+H+LNSLFQQKDAFTR  LNAISE+LALDES N   +WTPL
Sbjct: 1   MSTEKSHVYHERQRLQFCLIHTLNSLFQQKDAFTRANLNAISEKLALDESFNNESSWTPL 60

Query: 59  PFLFKPHHNALTGNYDINVLIAALEEKGKSVVWHDRRNGASSIDLDAPEDVLMGIVINVL 118
              FKPHHNALTGNYDINVL AALEEKGKSVVWHDRR G SS+DLDA EDVLMG+VIN+ 
Sbjct: 61  SIFFKPHHNALTGNYDINVLTAALEEKGKSVVWHDRRKGGSSVDLDASEDVLMGVVINIA 120

Query: 119 VTRFAGIWKGRHWITLRKIDGVWYNLDSDLAAPKAFCDKEKVREFLDFTIAHGGEVLLVM 178
           V RFAGIWK RHWI LRKIDGVWYNLDSDL+APK+F D ++VREFLD +I  GGEVLLVM
Sbjct: 121 VKRFAGIWKSRHWIALRKIDGVWYNLDSDLSAPKSFRDTDEVREFLDSSIVRGGEVLLVM 180

Query: 179 NEKHS 183
           N+K S
Sbjct: 181 NQKQS 185


>Medtr4g014710.1 | ataxin-3 protein | HC | chr4:4201230-4196019 |
           20130731
          Length = 331

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 26/183 (14%)

Query: 2   ATGNSHVYHERQRLQFCLLHSLNSLFQQKDAFTRTTLNAISERLALDESSNETWTPLPF- 60
           A+    +YHE Q  + C +H +N++ Q    F+   L A++  L   E        +P  
Sbjct: 6   ASNGGMLYHEVQESKLCAVHCVNTVLQ-GPFFSEFDLAALASDLDCKE---RQMMMMPAH 61

Query: 61  ------LFKPHHNALTGNYDINVLIAALEEKGKSVVWHDRRNGASSIDLDAPEDVLMGIV 114
                 LF  H+ +L G++ I VL  ALE      VW         I LD+P  V     
Sbjct: 62  SSAAGDLFS-HNVSLDGDFSIQVLQKALE------VWD-----LQVIPLDSP--VAEPAQ 107

Query: 115 INVLVTRFAGIWKGRHWITLRKIDGVWYNLDSDLAAPKAFCDKEKVREFLDFTIAHGGEV 174
           I+  +          HW  +RK++G WYN DS  AAP+    K  +  +LD     G  +
Sbjct: 108 IDPELENAFICHLQDHWFCIRKVNGEWYNFDSLYAAPQHL-SKFYLAAYLDSLKGFGWSI 166

Query: 175 LLV 177
            LV
Sbjct: 167 FLV 169