Miyakogusa Predicted Gene

Lj2g3v2245110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2245110.1 tr|G7K6B3|G7K6B3_MEDTR Josephin-like protein
OS=Medicago truncatula GN=MTR_5g069880 PE=4
SV=1,78.92,0,JOSEPHIN,Machado-Joseph disease protein MJD; SUBFAMILY
NOT NAMED,NULL; JOSEPHIN 1, 2,NULL; Josephin,,CUFF.38754.1
         (183 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29640.1 | Symbols: JOSL | JOSEPHIN-like protein | chr2:12671...   239   7e-64

>AT2G29640.1 | Symbols: JOSL | JOSEPHIN-like protein |
           chr2:12671206-12673300 FORWARD LENGTH=360
          Length = 360

 Score =  239 bits (610), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 108/165 (65%), Positives = 133/165 (80%), Gaps = 1/165 (0%)

Query: 1   MATGNSHVYHERQRLQFCLLHSLNSLFQQKDAFTRTTLNAISERLALDESSNETWTPLPF 60
           MA   S +YHERQRLQFCLLH LN+LFQ KDAFT+ +LN+I+E+L  ++ + ETWTPL F
Sbjct: 1   MADSESKIYHERQRLQFCLLHCLNNLFQDKDAFTKESLNSIAEKLETNDPNKETWTPLSF 60

Query: 61  LFKPHHNALTGNYDINVLIAALEEKGKSVVWHDRRNGASSIDLDAPEDVLMGIVINVLVT 120
           + KPHHN +TGNYD+NV+I ALE KGKSVVWHD+R GASSIDLD   D LMGIV+NV V 
Sbjct: 61  VLKPHHNTITGNYDVNVMITALEGKGKSVVWHDKRIGASSIDLDD-ADTLMGIVLNVPVK 119

Query: 121 RFAGIWKGRHWITLRKIDGVWYNLDSDLAAPKAFCDKEKVREFLD 165
           R+ G+W+ RHW+ +RKI+GVWYNLDSDL  P+ F D ++VR FLD
Sbjct: 120 RYGGLWRSRHWVVVRKINGVWYNLDSDLVVPQLFRDDDEVRGFLD 164