Miyakogusa Predicted Gene

Lj2g3v2183130.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2183130.1 tr|G7KDC0|G7KDC0_MEDTR E3 ubiquitin-protein
ligase synoviolin B OS=Medicago truncatula
GN=MTR_5g0684,77.1,0,seg,NULL; no description,Zinc finger,
RING/FYVE/PHD-type; zf-RING_2,Zinc finger, RING-type;
RING/U-b,CUFF.38685.1
         (485 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g068460.1 | zinc finger, C3HC4 type (RING finger) protein ...   693   0.0  
Medtr7g074140.1 | zinc finger, C3HC4 type (RING finger) protein ...   509   e-144
Medtr3g093660.1 | RING zinc finger protein, putative | HC | chr3...   312   4e-85
Medtr5g007710.1 | ubiquitin-protein ligase synoviolin | HC | chr...    67   4e-11
Medtr5g007710.2 | ubiquitin-protein ligase synoviolin | HC | chr...    67   4e-11
Medtr4g077800.1 | E3 ubiquitin-protein ligase synoviolin-like pr...    64   3e-10
Medtr4g077800.2 | E3 ubiquitin-protein ligase synoviolin-like pr...    64   3e-10
Medtr3g007760.1 | E3 ubiquitin protein ligase RIN2 | HC | chr3:1...    56   6e-08
Medtr3g007760.2 | E3 ubiquitin protein ligase RIN2 | HC | chr3:1...    56   7e-08
Medtr3g110190.1 | RING-H2 finger protein ATL4J | HC | chr3:51190...    55   2e-07
Medtr3g100400.1 | anaphase-promoting complex subunit 11 RING-H2 ...    53   7e-07
Medtr5g066250.1 | RING-H2 zinc finger protein | LC | chr5:279404...    52   1e-06
Medtr7g092960.1 | anaphase-promoting complex subunit 11 RING-H2 ...    52   2e-06
Medtr2g436100.1 | RING-H2 zinc finger protein | HC | chr2:139995...    52   2e-06

>Medtr5g068460.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr5:28979430-28987791 | 20130731
          Length = 481

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/453 (76%), Positives = 378/453 (83%), Gaps = 10/453 (2%)

Query: 37  VSWYGMRLPSVNPLRSPLSLLLDYSGILTQTHDSGSVIVNNGVPASEIRSQVQMQPFDDA 96
           VSWYGMRLP VNP  SP+S LLDYSGIL   +DS  +IVNNGV  SE+R QV        
Sbjct: 35  VSWYGMRLP-VNPFLSPISFLLDYSGILRSGNDSEGMIVNNGVSGSELRPQVDAG--GAV 91

Query: 97  VGGSAGEVAIRIIGAGEHDQNQIGEVGFDGC-DNLMGERRGAGMSPL-DDDPEGRGGAAV 154
            G SAGEVAIRIIGAGE+  NQ+GEVG+D C + L+ ER  +GM  L ++D EGRGG   
Sbjct: 92  AGSSAGEVAIRIIGAGENIHNQVGEVGYDDCGEELIAER--SGMPGLGENDAEGRGGIEA 149

Query: 155 NETVPXXXXXXXXXXXXX--XDGDAAGNGAESDSRGSSSYQRYDIQQVAKWIEQILPFSL 212
           +E VP                DG+AAGNG E++ R SSSYQRYDIQ VAKWIEQILPFSL
Sbjct: 150 SEGVPLVSSSSSSSLAGSGQVDGEAAGNGTENN-RDSSSYQRYDIQLVAKWIEQILPFSL 208

Query: 213 LLLIVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLVGISFAFILQVTCI 272
           LLL+VFIRQHLQGFFVTIWI+AVMFKSNEIVKKQTALKGDRKVS+L GI+FAFIL V CI
Sbjct: 209 LLLVVFIRQHLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGIAFAFILHVICI 268

Query: 273 YWWYRNDDLLYPLIMLPPRPTPFWHSVFIILVNDVLVRQAAMVFKCFLLIYYKNGKGHNF 332
           YWWYRNDD+LYPL MLPP PTPFWH++F ILVND+L+RQ AM FKC LLIYYK GKGHNF
Sbjct: 269 YWWYRNDDILYPLAMLPPNPTPFWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGHNF 328

Query: 333 RRQAQMLTLVEYMLLLYRALLPTLVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSIIEKVR 392
           RRQAQMLTLVEY LLLYRALLPT VWYRFFLNR+YGSLFSSLTTGLYLTFKLTS++EKV+
Sbjct: 329 RRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQ 388

Query: 393 GFISAFKALSRKDVHYGVYATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWF 452
            FISA KALSRK+VHYGVYAT EQV AAGDLCAICQEKMHSP+LLRCKHIFCE+CVSEWF
Sbjct: 389 CFISALKALSRKEVHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWF 448

Query: 453 ERERTCPLCRALVKPADLQTFGDGSTSLFFQLF 485
           ERERTCPLCRALVK ADL+TFGDGSTSLFFQLF
Sbjct: 449 ERERTCPLCRALVKAADLRTFGDGSTSLFFQLF 481


>Medtr7g074140.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr7:27693298-27698469 | 20130731
          Length = 426

 Score =  509 bits (1310), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 274/440 (62%), Positives = 323/440 (73%), Gaps = 40/440 (9%)

Query: 50  LRSPLSLLLDYSGILTQTHDSGSVIVNNGVPASEIRSQVQMQPFDDAVGGSAGEVAIRII 109
           +++PLS LL+YSGIL               PA   RS  Q QP  D+     GEV+IRII
Sbjct: 23  IQAPLSALLEYSGIL---------------PA---RSNQQHQPIPDSAPND-GEVSIRII 63

Query: 110 GAGEHDQNQIGEVGFDGCDNLMGERRGAGMSPLDDDPEGRGGAAVNETVPXXXXXXXXXX 169
           G+ E D N   E G                SPL  +  G   A  N +            
Sbjct: 64  GSNEQD-NHRDEQG----------------SPLVVNDGGGAAAMTNSSEHGDVEGVLRTG 106

Query: 170 XXXXDGDAAGNGAESDSRGS---SSYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGF 226
               D ++ G G   D   +   SSYQRYDIQ  A+WIEQ+LPFSLLLL+VFIRQHLQGF
Sbjct: 107 SGNVDAESGGGGGGGDVGANGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGF 166

Query: 227 FVTIWISAVMFKSNEIVKKQTALKGDRKVSVLVGISFAFILQVTCIYWWYRNDDLLYPLI 286
           FVTIWI+AV+FKSN+I++KQTALKG+RK+ VL+GIS AF L V  +YWWY+NDDL+YPL+
Sbjct: 167 FVTIWIAAVLFKSNDILRKQTALKGERKMPVLIGISVAFTLHVVSVYWWYQNDDLMYPLV 226

Query: 287 MLPPRPTP-FWHSVFIILVNDVLVRQAAMVFKCFLLIYYKNGKGHNFRRQAQMLTLVEYM 345
           MLPP+  P FWH++FII+VND L RQAAMV KC LL+YYKN +G N+R+Q QMLTLVEY+
Sbjct: 227 MLPPKEIPPFWHAIFIIMVNDTLARQAAMVVKCILLMYYKNSRGRNYRKQGQMLTLVEYL 286

Query: 346 LLLYRALLPTLVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSIIEKVRGFISAFKALSRKD 405
           LLLYRALLP  VWYRFFLN++YGSLFSSL TGLYLTFKLTS++EKV+ F +A KALSRK+
Sbjct: 287 LLLYRALLPAPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKE 346

Query: 406 VHYGVYATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALV 465
           VHYG +AT EQV AAGDLCAICQEKMH+P+LLRCKHIFCE+CVSEWFERERTCPLCRALV
Sbjct: 347 VHYGAHATSEQVIAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALV 406

Query: 466 KPADLQTFGDGSTSLFFQLF 485
           KPADL++FGDGSTSLFFQLF
Sbjct: 407 KPADLRSFGDGSTSLFFQLF 426


>Medtr3g093660.1 | RING zinc finger protein, putative | HC |
           chr3:42800974-42797203 | 20130731
          Length = 302

 Score =  312 bits (800), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 167/255 (65%), Positives = 196/255 (76%), Gaps = 4/255 (1%)

Query: 181 GAESDSRGSSSYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGFFVTIWISAVMFKSN 240
           G  SDS   S+Y  +D QQ+AK ++QILPFSLLLLIV IR+H++ FFVTI   AVMF+SN
Sbjct: 50  GGVSDS--FSTYSWFDFQQIAKMVDQILPFSLLLLIVLIRRHMEYFFVTIGAIAVMFRSN 107

Query: 241 EIVKKQTALKGDRKVSVLVGISFAFILQVTCIYWWYRNDDLLYPLIMLPPRPTP-FWHSV 299
           E+VKKQTALKGDRKVS L+G+SF+F+L V CIY  Y NDD+L+PL M PP  TP FW ++
Sbjct: 108 ELVKKQTALKGDRKVSALLGLSFSFMLYVICIYQLYGNDDVLFPLAMFPPETTPSFWKAI 167

Query: 300 FIILVNDVLVRQAAMVFKCFLLIYYKNGKGHNFRRQAQMLTLVEYMLLLYRALLPTLVWY 359
           FIILVND +VRQ AM FKC LLIYYKNG+GHNFR Q QMLTLVEY LLLYRA LP  VWY
Sbjct: 168 FIILVNDTMVRQVAMAFKCLLLIYYKNGRGHNFRHQGQMLTLVEYTLLLYRAFLPAPVWY 227

Query: 360 RFFLNRDYGSLFSSLTTGLYLTFKLTSIIEKVRGFISAFKALSRKDVHYGVYATMEQVNA 419
           RFF   D+GSLFSS+ TGLYLTFKLTS ++KV   + A KALS  ++HYGVYAT EQVN 
Sbjct: 228 RFFFYMDFGSLFSSIITGLYLTFKLTSAVDKVTCVLFALKALSEDEIHYGVYATPEQVNI 287

Query: 420 -AGDLCAICQEKMHS 433
              DL     +K+ S
Sbjct: 288 LKNDLMKSGYDKLQS 302


>Medtr5g007710.1 | ubiquitin-protein ligase synoviolin | HC |
           chr5:1471216-1474618 | 20130731
          Length = 539

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 37/58 (63%)

Query: 412 ATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPAD 469
           AT E++NA+   C IC+E+M +   L C H+F   C+  W ER+ TCP CRALV P +
Sbjct: 280 ATSEELNASDATCIICREEMTAAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337


>Medtr5g007710.2 | ubiquitin-protein ligase synoviolin | HC |
           chr5:1471216-1473344 | 20130731
          Length = 422

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 37/58 (63%)

Query: 412 ATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPAD 469
           AT E++NA+   C IC+E+M +   L C H+F   C+  W ER+ TCP CRALV P +
Sbjct: 280 ATSEELNASDATCIICREEMTAAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337


>Medtr4g077800.1 | E3 ubiquitin-protein ligase synoviolin-like
           protein | HC | chr4:29778294-29784602 | 20130731
          Length = 522

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 344 YMLLLYRALLPTLVWYRFFLNR--DYGSLFSSLTTGLYLTFKLTSIIEKVRGFISAFKAL 401
           + L L R LL   ++  FFL    +YG     L   LY TF+   +  ++  ++   K  
Sbjct: 214 FYLELVRDLLHLSMYMCFFLAIFINYGVPLH-LIRELYETFRNFKV--RISDYLRYRKIT 270

Query: 402 SRKDVHYGVYATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLC 461
           S  +  +   AT E++N+    C IC+E+M +   L C H+F   C+  W ER+ TCP C
Sbjct: 271 SNMNDRFPD-ATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTC 329

Query: 462 RALVKPAD 469
           RALV P++
Sbjct: 330 RALVVPSE 337


>Medtr4g077800.2 | E3 ubiquitin-protein ligase synoviolin-like
           protein | HC | chr4:29778294-29783780 | 20130731
          Length = 495

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 412 ATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPAD 469
           AT E++N+    C IC+E+M +   L C H+F   C+  W ER+ TCP CRALV P++
Sbjct: 280 ATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSE 337


>Medtr3g007760.1 | E3 ubiquitin protein ligase RIN2 | HC |
           chr3:1166460-1173444 | 20130731
          Length = 589

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 22/161 (13%)

Query: 322 IYYKNGKGHNFRRQAQM--LT---LVEYMLLLYRALLPTLVWYRFFLN--------RDYG 368
           I++    G +FR    +  LT   L+E+  +L R L   L    FF+         R +G
Sbjct: 222 IHHSACSGSDFRTHKLLDALTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHG 281

Query: 369 SLFSSLTTGLYLTFK--LTSIIEKVRGFISAFKALSRKDVHYGVY-ATMEQVNAAGDLCA 425
             F  +   L+L  +  L+++I +++GFI    AL    +H  +  AT E++    D CA
Sbjct: 282 MAFHLVDAVLFLNIRALLSAMINRIKGFIRLRIALGA--LHAALPDATTEELRGYEDECA 339

Query: 426 ICQEKMHSPVLLRCKHIFCEECVSEWFER----ERTCPLCR 462
           IC+E M     L C H+F   C+  W ++      TCP CR
Sbjct: 340 ICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCR 380


>Medtr3g007760.2 | E3 ubiquitin protein ligase RIN2 | HC |
           chr3:1168361-1173444 | 20130731
          Length = 566

 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 359 YRFFLNRDYGSLFSSLTTGLYLTFK--LTSIIEKVRGFISAFKALSRKDVHYGVY-ATME 415
           +  ++ R +G  F  +   L+L  +  L+++I +++GFI    AL    +H  +  AT E
Sbjct: 249 HYLYIWRLHGMAFHLVDAVLFLNIRALLSAMINRIKGFIRLRIALG--ALHAALPDATTE 306

Query: 416 QVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFER----ERTCPLCR 462
           ++    D CAIC+E M     L C H+F   C+  W ++      TCP CR
Sbjct: 307 ELRGYEDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCR 357


>Medtr3g110190.1 | RING-H2 finger protein ATL4J | HC |
           chr3:51190946-51189912 | 20130731
          Length = 344

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 424 CAICQEKMHSPVLLR----CKHIFCEECVSEWFERERTCPLCRALVKPADLQTFGDGSTS 479
           C +C  K     +LR    CKH F   C+ +W E   TCPLCR +V+ +D++ F    +S
Sbjct: 92  CTVCLSKFEDEEILRLLPKCKHAFHMNCIDKWLESHSTCPLCRYMVEESDIRNFTFSFSS 151

Query: 480 LFFQL 484
            F ++
Sbjct: 152 RFLRV 156


>Medtr3g100400.1 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr3:46169451-46168093 | 20130731
          Length = 411

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 424 CAICQEKMHSPVLLR----CKHIFCEECVSEWFERERTCPLCRALVKPADL 470
           CA+C  K  S  +LR    CKH F  ECV  W +   TCPLCR  V P D+
Sbjct: 156 CAVCLSKFESSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDI 206


>Medtr5g066250.1 | RING-H2 zinc finger protein | LC |
           chr5:27940400-27939099 | 20130731
          Length = 433

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 424 CAICQEKMHSPVLLR----CKHIFCEECVSEWFERERTCPLCRALVKPADL 470
           CA+C      P +LR    CKH F  ECV  W +   +CPLCR  V P D+
Sbjct: 160 CAVCLNGFEDPDVLRLLPKCKHAFHMECVDMWLDEHSSCPLCRYKVNPDDI 210


>Medtr7g092960.1 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | LC | chr7:36904636-36904331 | 20130731
          Length = 101

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 5/46 (10%)

Query: 422 DLCAICQEKMHSP-----VLLRCKHIFCEECVSEWFERERTCPLCR 462
           D C+IC E++        V+  C H+F +EC+ +WF+R  TCPLCR
Sbjct: 51  DQCSICLEELFKGSKSECVMTECLHVFHKECIFQWFKRSLTCPLCR 96


>Medtr2g436100.1 | RING-H2 zinc finger protein | HC |
           chr2:13999588-13998012 | 20130731
          Length = 288

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 424 CAICQEKMHS----PVLLRCKHIFCEECVSEWFERERTCPLCRALVKP 467
           CA+C  +  S     VL +CKH F  EC+  WF    TCPLCRA V+P
Sbjct: 119 CAVCLSEFESGETGRVLPKCKHSFHTECIDMWFHSHDTCPLCRAPVEP 166