Miyakogusa Predicted Gene
- Lj2g3v2183130.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2183130.1 tr|G7KDC0|G7KDC0_MEDTR E3 ubiquitin-protein
ligase synoviolin B OS=Medicago truncatula
GN=MTR_5g0684,77.1,0,seg,NULL; no description,Zinc finger,
RING/FYVE/PHD-type; zf-RING_2,Zinc finger, RING-type;
RING/U-b,CUFF.38685.1
(485 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G01960.1 | Symbols: | RING/U-box superfamily protein | chr5:... 554 e-158
AT1G65040.1 | Symbols: | RING/U-box superfamily protein | chr1:... 67 4e-11
AT1G65040.3 | Symbols: | RING/U-box superfamily protein | chr1:... 66 5e-11
AT1G65040.2 | Symbols: | RING/U-box superfamily protein | chr1:... 66 5e-11
AT3G16090.1 | Symbols: | RING/U-box superfamily protein | chr3:... 64 2e-10
AT4G25230.2 | Symbols: RIN2 | RPM1 interacting protein 2 | chr4:... 54 3e-07
AT4G25230.1 | Symbols: RIN2 | RPM1 interacting protein 2 | chr4:... 54 3e-07
AT1G18780.1 | Symbols: | RING/U-box superfamily protein | chr1:... 53 5e-07
AT5G05810.1 | Symbols: ATL43 | RING/U-box superfamily protein | ... 53 6e-07
AT2G20030.1 | Symbols: | RING/U-box superfamily protein | chr2:... 52 1e-06
AT2G42350.1 | Symbols: | RING/U-box superfamily protein | chr2:... 51 2e-06
AT1G18770.1 | Symbols: | RING/U-box superfamily protein | chr1:... 51 2e-06
AT5G51450.1 | Symbols: RIN3 | RPM1 interacting protein 3 | chr5:... 50 3e-06
AT5G51450.2 | Symbols: RIN3 | RPM1 interacting protein 3 | chr5:... 50 3e-06
AT4G12140.1 | Symbols: | RING/U-box superfamily protein | chr4:... 50 4e-06
AT3G13228.1 | Symbols: | RING/U-box superfamily protein | chr3:... 49 6e-06
AT3G62690.1 | Symbols: ATL5 | AtL5 | chr3:23185829-23186602 REVE... 49 7e-06
AT2G29840.1 | Symbols: | RING/U-box superfamily protein | chr2:... 49 1e-05
>AT5G01960.1 | Symbols: | RING/U-box superfamily protein |
chr5:370811-372775 FORWARD LENGTH=426
Length = 426
Score = 554 bits (1427), Expect = e-158, Method: Compositional matrix adjust.
Identities = 276/445 (62%), Positives = 328/445 (73%), Gaps = 42/445 (9%)
Query: 44 LPSVNPLRSPLSLLLDYSGILTQTHDSGSVIVNNGVPASEIRSQVQMQPFDDAVGGSAGE 103
L + N +++P+S LL+YSG+ P+ E + V DD+ G S GE
Sbjct: 21 LSASNIIQAPISTLLEYSGLFRARPS----------PSHEAETLVS----DDSSGLSNGE 66
Query: 104 VAIRIIGAGEHD-QNQIGEVGFDGCDNLMGERRGAGMSPLDDDPEGRGGAAVNETVPXXX 162
VAIRIIG E D + + G L+G S DP G ++ P
Sbjct: 67 VAIRIIGNTEQDAETDTNALREPGHSELLGS------SATQVDPMGGASEGASQAAP--- 117
Query: 163 XXXXXXXXXXXDGD-AAGNGAESDSRGSSSYQRYDIQQVAKWIEQILPFSLLLLIVFIRQ 221
GD AAG+ A DS YQRYDIQQ A+WIEQILPFSLLLL+VFIRQ
Sbjct: 118 ------------GDPAAGDAASRDS----PYQRYDIQQAARWIEQILPFSLLLLVVFIRQ 161
Query: 222 HLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLVGISFAFILQVTCIYWWYRNDDL 281
HLQGFFV IWI+AVMFKSN+I+KKQTALKG+R +S L+GIS AF V +YWW+R DDL
Sbjct: 162 HLQGFFVAIWIAAVMFKSNDILKKQTALKGERHISALIGISVAFTAHVVGVYWWFRKDDL 221
Query: 282 LYPLIMLPPRPTP-FWHSVFIILVNDVLVRQAAMVFKCFLLIYYKNGKGHNFRRQAQMLT 340
LYPLIMLPP+ P FWH++FII+VND LVRQA+M+FKCFLL+YYKN +G N+R+Q Q+LT
Sbjct: 222 LYPLIMLPPKSIPPFWHAIFIIVVNDTLVRQASMIFKCFLLMYYKNSRGRNYRKQGQLLT 281
Query: 341 LVEYMLLLYRALLPTLVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSIIEKVRGFISAFKA 400
LVEY +LLYR+LLPT VWYRFFLN+DYGSLFSSL TGLYLTFKLTS++EKV+ F +A KA
Sbjct: 282 LVEYFMLLYRSLLPTPVWYRFFLNKDYGSLFSSLMTGLYLTFKLTSVVEKVQSFFTALKA 341
Query: 401 LSRKDVHYGVYATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPL 460
LSRK+VHYG YAT EQVNAAGDLCAICQEKMH+P+LLRCKH+FCE+CVSEWFERERTCPL
Sbjct: 342 LSRKEVHYGSYATTEQVNAAGDLCAICQEKMHTPILLRCKHMFCEDCVSEWFERERTCPL 401
Query: 461 CRALVKPADLQTFGDGSTSLFFQLF 485
CRALVKPADL++FGDGSTSLFFQ+F
Sbjct: 402 CRALVKPADLKSFGDGSTSLFFQIF 426
>AT1G65040.1 | Symbols: | RING/U-box superfamily protein |
chr1:24160105-24161992 REVERSE LENGTH=281
Length = 281
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 344 YMLLLYRALLPTLVWYRFFLN--RDYGSLFSSLTTGLYLTFKLTSIIEKVRGFISAFKAL 401
+ L L R LL ++ FFL +YG L L LY TF+ I +V ++ K
Sbjct: 35 FYLELVRDLLHLSMYLCFFLMIFMNYG-LPLHLIRELYETFRNFKI--RVTDYLRYRKIT 91
Query: 402 SRKDVHYGVYATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLC 461
S + + AT E++++ C IC+E+M S L C H+F C+ W ER+ TCP C
Sbjct: 92 SNMNDRFPD-ATPEELSSNDATCIICREEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTC 150
Query: 462 RALVKPADLQT 472
RALV PA+ T
Sbjct: 151 RALVVPAENAT 161
>AT1G65040.3 | Symbols: | RING/U-box superfamily protein |
chr1:24160105-24163365 REVERSE LENGTH=389
Length = 389
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 344 YMLLLYRALLPTLVWYRFFLN--RDYGSLFSSLTTGLYLTFKLTSIIEKVRGFISAFKAL 401
+ L L R LL ++ FFL +YG L L LY TF+ I +V ++ K
Sbjct: 143 FYLELVRDLLHLSMYLCFFLMIFMNYG-LPLHLIRELYETFRNFKI--RVTDYLRYRKIT 199
Query: 402 SRKDVHYGVYATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLC 461
S + + AT E++++ C IC+E+M S L C H+F C+ W ER+ TCP C
Sbjct: 200 SNMNDRFPD-ATPEELSSNDATCIICREEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTC 258
Query: 462 RALVKPAD 469
RALV PA+
Sbjct: 259 RALVVPAE 266
>AT1G65040.2 | Symbols: | RING/U-box superfamily protein |
chr1:24160105-24163365 REVERSE LENGTH=460
Length = 460
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 344 YMLLLYRALLPTLVWYRFFLN--RDYGSLFSSLTTGLYLTFKLTSIIEKVRGFISAFKAL 401
+ L L R LL ++ FFL +YG L L LY TF+ I +V ++ K
Sbjct: 214 FYLELVRDLLHLSMYLCFFLMIFMNYG-LPLHLIRELYETFRNFKI--RVTDYLRYRKIT 270
Query: 402 SRKDVHYGVYATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLC 461
S + + AT E++++ C IC+E+M S L C H+F C+ W ER+ TCP C
Sbjct: 271 SNMNDRFP-DATPEELSSNDATCIICREEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTC 329
Query: 462 RALVKPAD 469
RALV PA+
Sbjct: 330 RALVVPAE 337
>AT3G16090.1 | Symbols: | RING/U-box superfamily protein |
chr3:5456513-5458694 FORWARD LENGTH=492
Length = 492
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 412 ATMEQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADLQ 471
AT E++ A+ C IC+E+M + L C H+F C+ W ER++TCP CRALV P +
Sbjct: 280 ATPEELTASDATCIICREEMTNAKKLICGHLFHVHCLRSWLERQQTCPTCRALVVPPENA 339
Query: 472 T 472
T
Sbjct: 340 T 340
>AT4G25230.2 | Symbols: RIN2 | RPM1 interacting protein 2 |
chr4:12924446-12928671 FORWARD LENGTH=578
Length = 578
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 367 YGSLFSSLTTGLYLTFK--LTSIIEKVRGFISAFKALSRKDVHYGVY-ATMEQVNAAGDL 423
+G F + L+L + L++I+++++G+I AL +H + AT E++ A D
Sbjct: 279 HGIAFHLVDAVLFLNIRALLSAILKRIKGYIKLRIALGA--LHAALPDATSEELRAYDDE 336
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERE----RTCPLCR 462
CAIC+E M L C H+F C+ W ++ +CP CR
Sbjct: 337 CAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>AT4G25230.1 | Symbols: RIN2 | RPM1 interacting protein 2 |
chr4:12924446-12928671 FORWARD LENGTH=578
Length = 578
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 367 YGSLFSSLTTGLYLTFK--LTSIIEKVRGFISAFKALSRKDVHYGVY-ATMEQVNAAGDL 423
+G F + L+L + L++I+++++G+I AL +H + AT E++ A D
Sbjct: 279 HGIAFHLVDAVLFLNIRALLSAILKRIKGYIKLRIALGA--LHAALPDATSEELRAYDDE 336
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERE----RTCPLCR 462
CAIC+E M L C H+F C+ W ++ +CP CR
Sbjct: 337 CAICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>AT1G18780.1 | Symbols: | RING/U-box superfamily protein |
chr1:6476258-6477235 REVERSE LENGTH=325
Length = 325
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 400 ALSRKDVHYGVYATMEQVNAAGDLCAICQEKM---HSPVLLRCKHIFCEECVSEWFERER 456
AL+RK Y V D+C IC E+ S V L C H F EECV EWF R
Sbjct: 258 ALNRK-----TYKKASGVVCENDVCTICLEEFDDGRSIVTLPCGHEFDEECVLEWFVRSH 312
Query: 457 TCPLCR 462
CPLCR
Sbjct: 313 VCPLCR 318
>AT5G05810.1 | Symbols: ATL43 | RING/U-box superfamily protein |
chr5:1746938-1747999 FORWARD LENGTH=353
Length = 353
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 424 CAICQEKMHSPVLLR----CKHIFCEECVSEWFERERTCPLCRALVKPADLQTFGDGSTS 479
CA+C + +LR CKH F ECV W + TCPLCR V P D+ GD ++
Sbjct: 92 CAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLIGDCNS- 150
Query: 480 LFFQL 484
+F+L
Sbjct: 151 -WFEL 154
>AT2G20030.1 | Symbols: | RING/U-box superfamily protein |
chr2:8647813-8648985 FORWARD LENGTH=390
Length = 390
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 424 CAICQEKMHSPVLLR----CKHIFCEECVSEWFERERTCPLCRALVK-PADLQTFGDGST 478
C++C K +LR C+H F C+ +W E+ TCPLCR V DL G+ ST
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSST 183
Query: 479 SL 480
SL
Sbjct: 184 SL 185
>AT2G42350.1 | Symbols: | RING/U-box superfamily protein |
chr2:17639245-17639898 FORWARD LENGTH=217
Length = 217
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 418 NAAGDLCAIC----QEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPA 468
+ AG CA+C +EK ++ +L CKH+F CV W + TCP+CR +P+
Sbjct: 94 DVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPS 148
>AT1G18770.1 | Symbols: | RING/U-box superfamily protein |
chr1:6473370-6474048 REVERSE LENGTH=106
Length = 106
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 399 KALSRKDVHYGVYATMEQVNAAGDLCAICQEKMHSP---VLLRCKHIFCEECVSEWFERE 455
K+L+RK +Y ++ G++C IC E+ V L C H F +ECV +WFE
Sbjct: 41 KSLARK-----IYKMT--TSSTGEMCIICLEEFSEGRRVVTLPCGHDFDDECVLKWFETN 93
Query: 456 RTCPLCR 462
+CPLCR
Sbjct: 94 HSCPLCR 100
>AT5G51450.1 | Symbols: RIN3 | RPM1 interacting protein 3 |
chr5:20893164-20897223 FORWARD LENGTH=577
Length = 577
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 367 YGSLFSSLTTGLYLTFK--LTSIIEKVRGFISAFKALSRKDVHYGVYATMEQVNAAGDLC 424
+G F + L+L + L+SI+++++G+I + + AT E++ D C
Sbjct: 279 HGMAFHLVDAVLFLNIRALLSSILKRIKGYIK-LRVALGALHAALLDATSEELRDYDDEC 337
Query: 425 AICQEKMHSPVLLRCKHIFCEECVSEWFERE----RTCPLCR 462
AIC+E M L C H+F C+ W ++ +CP CR
Sbjct: 338 AICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>AT5G51450.2 | Symbols: RIN3 | RPM1 interacting protein 3 |
chr5:20893164-20897223 FORWARD LENGTH=595
Length = 595
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 367 YGSLFSSLTTGLYLTFK--LTSIIEKVRGFISAFKALSRKDVHYGVYATMEQVNAAGDLC 424
+G F + L+L + L+SI+++++G+I + + AT E++ D C
Sbjct: 279 HGMAFHLVDAVLFLNIRALLSSILKRIKGYIK-LRVALGALHAALLDATSEELRDYDDEC 337
Query: 425 AICQEKMHSPVLLRCKHIFCEECVSEWFERE----RTCPLCR 462
AIC+E M L C H+F C+ W ++ +CP CR
Sbjct: 338 AICREPMAKAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCR 379
>AT4G12140.1 | Symbols: | RING/U-box superfamily protein |
chr4:7266546-7267154 REVERSE LENGTH=202
Length = 202
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 414 MEQVNAAGDLCAICQEKMHS-----PVLLRCKHIFCEECVSEWFERERTCPLCRALV 465
++ N D C+IC + + S P + C H+F C+ EW +R+ TCP+CR ++
Sbjct: 143 LKSFNMETDSCSICLQSLVSSSKTGPTRMSCSHVFHSSCLVEWLKRKNTCPMCRTVL 199
>AT3G13228.1 | Symbols: | RING/U-box superfamily protein |
chr3:4267075-4268052 FORWARD LENGTH=325
Length = 325
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 399 KALSRKDVHYGVYATMEQVNAAGDLCAICQEKMHSP---VLLRCKHIFCEECVSEWFERE 455
K+L+RK +Y +++N G+ C IC E+ ++ V L C H F +EC +WFE
Sbjct: 258 KSLTRK-----IY---DKINYTGERCTICLEEFNAGGILVALPCGHDFDDECAVKWFETN 309
Query: 456 RTCPLCR 462
CPLCR
Sbjct: 310 HFCPLCR 316
>AT3G62690.1 | Symbols: ATL5 | AtL5 | chr3:23185829-23186602 REVERSE
LENGTH=257
Length = 257
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 424 CAIC----QEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADLQTFGDGSTS 479
C++C +E VL +C H+F +C+ WF +CPLCRA V+PA T + +
Sbjct: 113 CSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAA 172
Query: 480 LF 481
+F
Sbjct: 173 VF 174
>AT2G29840.1 | Symbols: | RING/U-box superfamily protein |
chr2:12732387-12733983 REVERSE LENGTH=293
Length = 293
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 397 AFKALSRKDVHYGVYATMEQVNAAGDLCAICQEKM---HSPVLLRCKHIFCEECVSEWFE 453
A ++L+RK Y V ++C+IC E+ S V L C H F +EC +WFE
Sbjct: 222 AVESLNRK-----TYKKASDVVGENEMCSICLEEFDDGRSIVALPCGHEFDDECALKWFE 276
Query: 454 RERTCPLCR 462
CPLCR
Sbjct: 277 TNHDCPLCR 285