Miyakogusa Predicted Gene
- Lj2g3v2183130.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v2183130.1 tr|G7KDC0|G7KDC0_MEDTR E3 ubiquitin-protein
ligase synoviolin B OS=Medicago truncatula
GN=MTR_5g0684,77.1,0,seg,NULL; no description,Zinc finger,
RING/FYVE/PHD-type; zf-RING_2,Zinc finger, RING-type;
RING/U-b,CUFF.38685.1
(1461 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67304 similar to UniRef100_A7Q9V6 Cluster: Chromosome... 2018 0.0
gnl|LJGI|TC62508 similar to UniRef100_O70642 Cluster: Rex protei... 957 0.0
gnl|LJGI|TC63920 658 0.0
gnl|LJGI|TC63858 similar to UniRef100_A7NXY7 Cluster: Chromosome... 555 e-157
>gnl|LJGI|TC67304 similar to UniRef100_A7Q9V6 Cluster: Chromosome chr8 scaffold_68,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_68, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (67%)
Length = 1472
Score = 2018 bits (1018), Expect = 0.0
Identities = 1018/1018 (100%)
Strand = Plus / Plus
Query: 444 tcgtggtggagctgcggttaatgagacggttcctttggtgtcttcatcggcttcgttggc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgtggtggagctgcggttaatgagacggttcctttggtgtcttcatcggcttcgttggc 60
Query: 504 aggtagtgtacagggtgatggtgatgctgctgggaatggtgcagaaagtgacagcagggg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggtagtgtacagggtgatggtgatgctgctgggaatggtgcagaaagtgacagcagggg 120
Query: 564 ttcatcatcctaccagaggtatgatattcagcaggtcgcaaagtggattgagcagattct 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcatcatcctaccagaggtatgatattcagcaggtcgcaaagtggattgagcagattct 180
Query: 624 tcctttctcactcttgttgttgattgttttcatcagacagcatttacaaggtttctttgt 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcctttctcactcttgttgttgattgttttcatcagacagcatttacaaggtttctttgt 240
Query: 684 cactatttggatatcagctgtgatgttcaaatcgaatgaaattgttaagaagcagacagc 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cactatttggatatcagctgtgatgttcaaatcgaatgaaattgttaagaagcagacagc 300
Query: 744 tttaaagggagataggaaagtgtctgtacttgtcggtatctcttttgctttcattcttca 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttaaagggagataggaaagtgtctgtacttgtcggtatctcttttgctttcattcttca 360
Query: 804 ggtcacatgcatttactggtggtatcgaaatgatgatctcttatacccactaatcatgct 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggtcacatgcatttactggtggtatcgaaatgatgatctcttatacccactaatcatgct 420
Query: 864 tcctcctagacctacacctttctggcattcagtattcatcatcttggtcaatgatgtatt 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcctcctagacctacacctttctggcattcagtattcatcatcttggtcaatgatgtatt 480
Query: 924 ggtgcggcaagctgcaatggttttcaagtgtttcctgcttatatattacaaaaatggcaa 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggtgcggcaagctgcaatggttttcaagtgtttcctgcttatatattacaaaaatggcaa 540
Query: 984 aggtcataacttccgccggcaggctcaaatgttaactttggttgagtacatgctgctgtt 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aggtcataacttccgccggcaggctcaaatgttaactttggttgagtacatgctgctgtt 600
Query: 1044 gtatcgtgccttattgccaacactggtttggtaccggtttttcttgaacagagattatgg 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtatcgtgccttattgccaacactggtttggtaccggtttttcttgaacagagattatgg 660
Query: 1104 cagtctcttttcgtcactgactacagggctttatttaactttcaagctaacatctatcat 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cagtctcttttcgtcactgactacagggctttatttaactttcaagctaacatctatcat 720
Query: 1164 tgagaaggtccgaggcttcatttctgccttcaaagcattgtcaagaaaggatgttcatta 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgagaaggtccgaggcttcatttctgccttcaaagcattgtcaagaaaggatgttcatta 780
Query: 1224 tggggtttatgctacaatggaacaggtcaatgctgctggcgacctatgtgctatatgcca 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tggggtttatgctacaatggaacaggtcaatgctgctggcgacctatgtgctatatgcca 840
Query: 1284 ggaaaagatgcattccccagtcttgttgcgctgtaaacacattttttgcgaggagtgtgt 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ggaaaagatgcattccccagtcttgttgcgctgtaaacacattttttgcgaggagtgtgt 900
Query: 1344 atcagaatggtttgagagggaaaggacttgcccactatgcagagcattggtgaaacctgc 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 atcagaatggtttgagagggaaaggacttgcccactatgcagagcattggtgaaacctgc 960
Query: 1404 tgatcttcagacctttggagacggatcaacaagtctgtttttccagttgttttaaaca 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tgatcttcagacctttggagacggatcaacaagtctgtttttccagttgttttaaaca 1018
>gnl|LJGI|TC62508 similar to UniRef100_O70642 Cluster: Rex protein; n=4;
Deltaretrovirus|Rep: Rex protein - Simian T-lymphotropic
virus 2, partial (10%)
Length = 819
Score = 957 bits (483), Expect = 0.0
Identities = 483/483 (100%)
Strand = Plus / Plus
Query: 1 atggaaactttggatggtaattcagaccaatacgccactgtttcttctaattcaccatcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atggaaactttggatggtaattcagaccaatacgccactgtttcttctaattcaccatcg 396
Query: 61 tcatcatctggagggtttaatagtagtgatgatcacaacaatggtagtgtgtcttggtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tcatcatctggagggtttaatagtagtgatgatcacaacaatggtagtgtgtcttggtat 456
Query: 121 gggatgaggttaccttctgttaaccctttacggtccccgctttcgttgttgttggattac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gggatgaggttaccttctgttaaccctttacggtccccgctttcgttgttgttggattac 516
Query: 181 tctggcattttaacccaaacccatgattctgggtctgtgattgtcaacaatggtgttccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tctggcattttaacccaaacccatgattctgggtctgtgattgtcaacaatggtgttccg 576
Query: 241 gcttcggagattcggtctcaggttcaaatgcagccatttgatgatgctgtggggggtagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gcttcggagattcggtctcaggttcaaatgcagccatttgatgatgctgtggggggtagt 636
Query: 301 gcaggggaagttgcaataaggatcattggagctggggagcatgatcagaatcagattggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gcaggggaagttgcaataaggatcattggagctggggagcatgatcagaatcagattggg 696
Query: 361 gaagtggggtttgatggttgtgataatctgatgggtgagagaagaggtgctggaatgtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gaagtggggtttgatggttgtgataatctgatgggtgagagaagaggtgctggaatgtct 756
Query: 421 ccgttggacgatgatcctgagggtcgtggtggagctgcggttaatgagacggttcctttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ccgttggacgatgatcctgagggtcgtggtggagctgcggttaatgagacggttcctttg 816
Query: 481 gtg 483
|||
Sbjct: 817 gtg 819
>gnl|LJGI|TC63920
Length = 784
Score = 658 bits (332), Expect = 0.0
Identities = 332/332 (100%)
Strand = Plus / Plus
Query: 1 atggaaactttggatggtaattcagaccaatacgccactgtttcttctaattcaccatcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atggaaactttggatggtaattcagaccaatacgccactgtttcttctaattcaccatcg 512
Query: 61 tcatcatctggagggtttaatagtagtgatgatcacaacaatggtagtgtgtcttggtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcatcatctggagggtttaatagtagtgatgatcacaacaatggtagtgtgtcttggtat 572
Query: 121 gggatgaggttaccttctgttaaccctttacggtccccgctttcgttgttgttggattac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gggatgaggttaccttctgttaaccctttacggtccccgctttcgttgttgttggattac 632
Query: 181 tctggcattttaacccaaacccatgattctgggtctgtgattgtcaacaatggtgttccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tctggcattttaacccaaacccatgattctgggtctgtgattgtcaacaatggtgttccg 692
Query: 241 gcttcggagattcggtctcaggttcaaatgcagccatttgatgatgctgtggggggtagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gcttcggagattcggtctcaggttcaaatgcagccatttgatgatgctgtggggggtagt 752
Query: 301 gcaggggaagttgcaataaggatcattggagc 332
||||||||||||||||||||||||||||||||
Sbjct: 753 gcaggggaagttgcaataaggatcattggagc 784
>gnl|LJGI|TC63858 similar to UniRef100_A7NXY7 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (71%)
Length = 1191
Score = 555 bits (280), Expect = e-157
Identities = 705/846 (83%), Gaps = 3/846 (0%)
Strand = Plus / Plus
Query: 616 cagattcttcctttctcactcttgttgttgattgttttcatcagacagcatttacaaggt 675
||||| || |||||| | ||||||||||||||||||||| || | ||||| | ||||||
Sbjct: 158 cagatactccctttcgccctcttgttgttgattgttttcgtccgccagcactggcaaggt 217
Query: 676 ttctttgtcactatttggatatcagctgtgatgttcaaatcgaatgaaattgttaagaag 735
||||||||||| || || ||||||||||||||||||||| |||||||||||||||||
Sbjct: 218 ttctttgtcaccatctgtgcatcagctgtgatgttcaaatcaaatgaaattgttaagaaa 277
Query: 736 cagacagctttaaagggagataggaaagtgtctgtacttgtcggtatctcttttgctttc 795
||||||||| ||||||||||| ||||||| ||||||||| || | ||| ||||||| |||
Sbjct: 278 cagacagctctaaagggagatcggaaagtctctgtacttctcagcatcgcttttgcgttc 337
Query: 796 attcttcaggtcacatgcatttactggtggtatcgaaatgatgatctcttatacccacta 855
|| || | || | |||||||| |||||| || | ||||||||||| | | ||||||
Sbjct: 338 atgttttatgtgatgtgcatttattggtggcattgtaatgatgatcttctgtccccactg 397
Query: 856 atcatgcttcctcctagacctacacct---ttctggcattcagtattcatcatcttggtc 912
||| |||| | | | | ||||| || ||||| || ||||||| | |||||
Sbjct: 398 gcaatggttccgtcaaaagcaacaccaccattttggcacacaatattcattgttttggtt 457
Query: 913 aatgatgtattggtgcggcaagctgcaatggttttcaagtgtttcctgcttatatattac 972
|||||| ||||||| ||||||| |||||| |||||||||||| ||||||| || |||
Sbjct: 458 aatgatacattggtgaggcaagcaacaatggctttcaagtgtttgttgcttatctactac 517
Query: 973 aaaaatggcaaaggtcataacttccgccggcaggctcaaatgttaactttggttgagtac 1032
||| || ||| ||| ||||| ||||| ||||||||||||||||||||| |||||||||||
Sbjct: 518 aaagatagcagaggccataatttccgtcggcaggctcaaatgttaactctggttgagtac 577
Query: 1033 atgctgctgttgtatcgtgccttattgccaacactggtttggtaccggtttttcttgaac 1092
| |||||||||||||| || || |||||||| | ||||||||||| ||||||||||||
Sbjct: 578 acactgctgttgtatcgggctttgttgccaacgccagtttggtaccgatttttcttgaac 637
Query: 1093 agagattatggcagtctcttttcgtcactgactacagggctttatttaactttcaagcta 1152
| || ||||| ||||||||||| |||||||| ||||| | ||| |||||||||| |||
Sbjct: 638 aaggaatatggaagtctcttttcatcactgaccacaggattgtatctaactttcaaacta 697
Query: 1153 acatctatcattgagaaggtccgaggcttcatttctgccttcaaagcattgtcaagaaag 1212
|||||| | ||||||||||||| | ||| || ||| || |||||||| |||| | |
Sbjct: 698 acatctgtagttgagaaggtccggtgtttctttagtgctttaaaagcattatcaaaacat 757
Query: 1213 gatgttcattatggggtttatgctacaatggaacaggtcaatgctgctggcgacctatgt 1272
|| ||||||||||||| |||||| |||||||||||||| ||||||||||| |||| ||
Sbjct: 758 gaagttcattatggggcttatgcaacaatggaacaggtaaatgctgctggtaacctttgc 817
Query: 1273 gctatatgccaggaaaagatgcattccccagtcttgttgcgctgtaaacacattttttgc 1332
|||||||||||||| ||||||||||| || |||||||| ||||||||||||| || |||
Sbjct: 818 gctatatgccaggagaagatgcattctcctatcttgttgtgctgtaaacacatgttctgc 877
Query: 1333 gaggagtgtgtatcagaatggtttgagagggaaaggacttgcccactatgcagagcattg 1392
|| ||||||||||| |||||||||||||| ||| ||||||||||| ||||||| |||| |
Sbjct: 878 gaagagtgtgtatccgaatggtttgagagagaacggacttgcccattatgcagggcatcg 937
Query: 1393 gtgaaacctgctgatcttcagacctttggagacggatcaacaagtctgtttttccagttg 1452
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 938 gtaaaacccgctgatctgcagacctttggagacggatcaacaagtctgttttttcagttg 997
Query: 1453 ttttaa 1458
||||||
Sbjct: 998 ttttaa 1003